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[2.4.1] - Wangen (Patch) - 2021-11-30
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@TCLamnidis TCLamnidis released this 30 Nov 13:57
· 302 commits to master since this release
2.4.1
20b0be4
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Learn about vigilant mode.

[2.4.1] - 2021-11-30

Added

  • #805 Changes to bam_trim options to allow flexible trimming by library strandedness (in addition to UDG treatment). (@TCLamnidis)
  • #808 Retain read group information across bam merges. Sample set to sample name (rather than library name) in bwa output 'RG' readgroup tag. (@TCLamnidis)
  • Map and base quality filters prior to genotyping with pileupcaller can now be specified. (@TCLamnidis)
  • #774 Added support for multi-threaded Bowtie2 build reference genome indexing (@jfy133)
  • #804 Improved output documentation description to add how 'cluster factor' is calculated (thanks to @meganemichel)

Fixed

  • #803 Fixed mistake in metro-map diagram (samtools index is now correctly samtools faidx) (@jfy133)

Dependencies

Deprecated

Contributors

jfy133, TCLamnidis, and meganemichel
Assets 2
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