You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
nf-core/eager FAQ/troubleshooting can be found here
Description of the bug
When having eg. a negative control, Kraken will break because of a missing output since no sequences were found. No complexity filtering applied. The unmapped FASTQ is basically empty.
Check Documentation
I have checked the following places for your error:
Description of the bug
When having eg. a negative control, Kraken will break because of a missing output since no sequences were found. No complexity filtering applied. The unmapped FASTQ is basically empty.
Steps to reproduce
Steps to reproduce the behaviour:
nextflow run nf-core/eager -r 2.3.3 -profile production,crick -params-file nf-params.json -c $alexandre/bin/custom.config
Missing output file(s)
*.kraken.out
expected by process `kraken ...Loading database information... done.
0 sequences (0.00 Mbp) processed in 0.009s (0.0 Kseq/m, 0.00 Mbp/m).
0 sequences classified (-nan%)
0 sequences unclassified (-nan%)
Expected behaviour
Pipeline shouldn't break because of missing Kraken output.
Log files
Have you provided the following extra information/files:
.nextflow.log
fileSystem
Nextflow Installation
Container engine
Additional context
The text was updated successfully, but these errors were encountered: