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Update defaults
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Alexander Peltzer authored and Alexander Peltzer committed Nov 19, 2018
1 parent 98bbf27 commit a05b426
Showing 1 changed file with 2 additions and 1 deletion.
3 changes: 2 additions & 1 deletion main.nf
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Expand Up @@ -176,7 +176,8 @@ params.circularfilter = false
params.bwamem = false

//BAM Filtering steps (default = keep mapped and unmapped in BAM file)
params.bam_retain_unmapped = false
params.bam_retain_unmapped = true
params.bam_separate_unmapped = false
params.bam_discard_unmapped = false
params.bam_unmapped_to_fastq = false
params.bam_unmapped_rm_type = 'bam'
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