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Increased resources for the Trinity module as this step often times out. This addresses Issue #12.
Trinity documentation suggests that for 1 M pairs of Illumina reads, you would need 1GB of memory and 0.5-1hr of time.
For estimation purposes, based on samples on NCBI's SRA, I would say 1 sample=~30M paired reads. To make an assembly from 6 samples, 180GB memory and 90-180 hrs would seem like a reasonable amount of resources to try out.
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).