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Post-release v1.4.1 #178

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May 16, 2024
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Post-release v1.4.1 #178

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4 changes: 2 additions & 2 deletions assets/multiqc_config.yml
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@@ -1,8 +1,8 @@
report_comment: >

This report has been generated by the <a href="https://github.com/nf-core/demultiplex/releases/tag/1.4.1" target="_blank">nf-core/demultiplex</a>
This report has been generated by the <a href="https://github.com/nf-core/demultiplex/tree/dev" target="_blank">nf-core/demultiplex</a>
analysis pipeline. For information about how to interpret these results, please see the
<a href="https://nf-co.re/demultiplex/1.4.1/docs/output" target="_blank">documentation</a>.
<a href="https://nf-co.re/demultiplex/dev/docs/output" target="_blank">documentation</a>.

report_section_order:
"nf-core-demultiplex-methods-description":
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -252,7 +252,7 @@ manifest {
description = """Demultiplexing pipeline for Illumina sequencing data"""
mainScript = 'main.nf'
nextflowVersion = '!>=23.04.0'
version = '1.4.1'
version = '1.5.0dev'
doi = '10.5281/zenodo.7153103'
}

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18 changes: 5 additions & 13 deletions tests/pipeline/bases2fastq.nf.test.snap
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@@ -1,26 +1,18 @@
{
"software_versions": {
"content": [
"{BASES2FASTQ={bases2fastq=1.1.0.593880262, use subject to license available at elementbiosciences.com}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, UNTAR={untar=1.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
"{BASES2FASTQ={bases2fastq=1.1.0.593880262, use subject to license available at elementbiosciences.com}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, UNTAR={untar=1.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-05-15T01:16:56.776953"
"timestamp": "2024-05-16T08:36:50.320731"
},
"bases2fastq": {
"content": [
"Metrics.csv:md5,87702e562aa1091e70e5d6e2e19f10b0",
"RunManifest.json:md5,f18eddb73c7051db0ef5c44e6eced9ec",
"RunManifest.json:md5,d4ecdb19e5fbcffab3e6e770c34023fb",
"UnassignedSequences.csv:md5,11c1693830ce941b8cfb8d2431a59097",
"DefaultSample_R1.fastq.gz:md5,0cc292ca98e126f915a6c0ea9588b752",
"DefaultSample_R2.fastq.gz:md5,069b0ccb3069a47abd97c39377b10c34"
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2023-12-11T16:40:05.942646"
"timestamp": "2024-05-16T08:36:51.617503"
}
}
}
16 changes: 2 additions & 14 deletions tests/pipeline/bcl2fastq.nf.test.snap
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@@ -1,13 +1,9 @@
{
"software_versions": {
"content": [
"{BCL2FASTQ={bcl2fastq=2.20.0.422}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
"{BCL2FASTQ={bcl2fastq=2.20.0.422}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-05-15T01:14:30.793241"
"timestamp": "2024-05-16T08:34:54.650638"
},
"bcl2fastq": {
"content": [
Expand Down Expand Up @@ -64,10 +60,6 @@
"Stats.json:md5,8e5f038b8aa9e465599d3575f930e604"
]
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2023-12-11T16:37:27.684322"
},
"multiqc": {
Expand All @@ -76,10 +68,6 @@
"multiqc_fastp.txt:md5,d65cc0ccd033e949132c2e46b1f81717",
"multiqc_bcl2fastq_bysample.txt:md5,1865f27f430d153085b26c86320718fe"
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2023-12-11T16:55:21.680453"
}
}
16 changes: 2 additions & 14 deletions tests/pipeline/bclconvert.nf.test.snap
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Expand Up @@ -20,32 +20,20 @@
"fastq_list.csv:md5,05bc84f51840f5754cfb8381b36f2cb0"
]
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2023-12-11T16:38:54.135338"
},
"software_versions": {
"content": [
"{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
"{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-05-15T01:34:10.930524"
"timestamp": "2024-05-16T08:36:09.489747"
},
"multiqc": {
"content": [
"multiqc_bclconvert_bylane.txt:md5,c796947c68cf713a8b7ef8066a7b4ec7",
"multiqc_fastp.txt:md5,d65cc0ccd033e949132c2e46b1f81717",
"multiqc_bclconvert_bysample.txt:md5,07048c9b73ed85bdac03c476b192c4e3"
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-05-15T01:34:10.988849"
}
}
12 changes: 2 additions & 10 deletions tests/pipeline/fqtk.nf.test.snap
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Expand Up @@ -3,20 +3,12 @@
"content": [
"demux-metrics.txt:md5,1d587fa959f9129155314cf531103347"
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2023-10-17T08:06:53+0000"
},
"software_versions": {
"content": [
"{FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, FQTK={fqtk=0.2.1}, MD5SUM={md5sum=8.3}, UNTAR={untar=1.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
"{FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, FQTK={fqtk=0.2.1}, MD5SUM={md5sum=8.3}, UNTAR={untar=1.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-05-15T03:01:59.608315"
"timestamp": "2024-05-16T08:44:12.032652"
}
}
12 changes: 2 additions & 10 deletions tests/pipeline/sgdemux.nf.test.snap
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@@ -1,13 +1,9 @@
{
"software_versions": {
"content": [
"{FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, SGDEMUX={sgdemux=1.1.1}, UNTAR={untar=1.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
"{FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, SGDEMUX={sgdemux=1.1.1}, UNTAR={untar=1.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-05-15T03:07:02.261713"
"timestamp": "2024-05-16T08:38:19.437888"
},
"sgdemux": {
"content": [
Expand All @@ -16,10 +12,6 @@
"per_sample_metrics.tsv:md5,fb8ce024ad2508e7b22a4af65fe44358",
"sample_barcode_hop_metrics.tsv:md5,d41d8cd98f00b204e9800998ecf8427e"
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2023-10-17T08:01:14+0000"
}
}
60 changes: 10 additions & 50 deletions tests/pipeline/skip_tools.nf.test.snap
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@@ -1,13 +1,9 @@
{
"software_versions_skip_trimming": {
"content": [
"{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
"{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-05-15T03:10:25.288393"
"timestamp": "2024-05-16T08:39:34.361632"
},
"skip_fastqc": {
"content": [
Expand All @@ -29,10 +25,6 @@
"fastq_list.csv:md5,05bc84f51840f5754cfb8381b36f2cb0"
]
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2023-12-11T16:45:17.736105"
},
"skip_fastp": {
Expand All @@ -55,10 +47,6 @@
"fastq_list.csv:md5,05bc84f51840f5754cfb8381b36f2cb0"
]
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2023-12-11T16:43:54.005346"
},
"skip_multiqc": {
Expand All @@ -81,10 +69,6 @@
"fastq_list.csv:md5,05bc84f51840f5754cfb8381b36f2cb0"
]
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2023-12-11T16:47:17.03681"
},
"skip_fastp_fastqc": {
Expand All @@ -107,51 +91,31 @@
"fastq_list.csv:md5,05bc84f51840f5754cfb8381b36f2cb0"
]
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2023-12-11T16:46:00.460287"
},
"software_versions_skip_fastqc": {
"content": [
"{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
"{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-05-15T03:12:02.414276"
"timestamp": "2024-05-16T08:41:12.480795"
},
"software_versions_skip_fastp_fastqc": {
"content": [
"{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
"{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-05-15T03:12:31.957377"
"timestamp": "2024-05-16T08:41:37.617916"
},
"software_versions_skip_multiqc": {
"content": [
"{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
"{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-05-15T03:26:41.590674"
"timestamp": "2024-05-16T08:42:46.504885"
},
"software_versions_skip_fastp": {
"content": [
"{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
"{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2024-05-15T03:10:54.678632"
"timestamp": "2024-05-16T08:40:02.626844"
},
"skip_trimming": {
"content": [
Expand All @@ -173,10 +137,6 @@
"fastq_list.csv:md5,05bc84f51840f5754cfb8381b36f2cb0"
]
],
"meta": {
"nf-test": "0.8.4",
"nextflow": "23.10.1"
},
"timestamp": "2023-12-11T16:43:15.513271"
}
}
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