Merge pull request #178 from Aratz/dev

Post-release v1.4.1
nf-core · May 16, 2024 · 6a960ff · 6a960ff
2 parents 81e26ca + d40b0d9
commit 6a960ff
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diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
@@ -1,8 +1,8 @@
 report_comment: >
 
-  This report has been generated by the <a href="https://github.com/nf-core/demultiplex/releases/tag/1.4.1" target="_blank">nf-core/demultiplex</a>
+  This report has been generated by the <a href="https://github.com/nf-core/demultiplex/tree/dev" target="_blank">nf-core/demultiplex</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/demultiplex/1.4.1/docs/output" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/demultiplex/dev/docs/output" target="_blank">documentation</a>.
 
 report_section_order:
   "nf-core-demultiplex-methods-description":

diff --git a/nextflow.config b/nextflow.config
@@ -252,7 +252,7 @@ manifest {
     description     = """Demultiplexing pipeline for Illumina sequencing data"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '1.4.1'
+    version         = '1.5.0dev'
     doi             = '10.5281/zenodo.7153103'
 }
 

diff --git a/tests/pipeline/bases2fastq.nf.test.snap b/tests/pipeline/bases2fastq.nf.test.snap
@@ -1,26 +1,18 @@
 {
     "software_versions": {
         "content": [
-            "{BASES2FASTQ={bases2fastq=1.1.0.593880262, use subject to license available at elementbiosciences.com}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, UNTAR={untar=1.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
+            "{BASES2FASTQ={bases2fastq=1.1.0.593880262, use subject to license available at elementbiosciences.com}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, UNTAR={untar=1.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
-        "timestamp": "2024-05-15T01:16:56.776953"
+        "timestamp": "2024-05-16T08:36:50.320731"
     },
     "bases2fastq": {
         "content": [
             "Metrics.csv:md5,87702e562aa1091e70e5d6e2e19f10b0",
-            "RunManifest.json:md5,f18eddb73c7051db0ef5c44e6eced9ec",
+            "RunManifest.json:md5,d4ecdb19e5fbcffab3e6e770c34023fb",
             "UnassignedSequences.csv:md5,11c1693830ce941b8cfb8d2431a59097",
             "DefaultSample_R1.fastq.gz:md5,0cc292ca98e126f915a6c0ea9588b752",
             "DefaultSample_R2.fastq.gz:md5,069b0ccb3069a47abd97c39377b10c34"
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
-        "timestamp": "2023-12-11T16:40:05.942646"
+        "timestamp": "2024-05-16T08:36:51.617503"
     }
-}
+}
diff --git a/tests/pipeline/bcl2fastq.nf.test.snap b/tests/pipeline/bcl2fastq.nf.test.snap
@@ -1,13 +1,9 @@
 {
     "software_versions": {
         "content": [
-            "{BCL2FASTQ={bcl2fastq=2.20.0.422}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
+            "{BCL2FASTQ={bcl2fastq=2.20.0.422}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
-        "timestamp": "2024-05-15T01:14:30.793241"
+        "timestamp": "2024-05-16T08:34:54.650638"
     },
     "bcl2fastq": {
         "content": [
@@ -64,10 +60,6 @@
                 "Stats.json:md5,8e5f038b8aa9e465599d3575f930e604"
             ]
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
         "timestamp": "2023-12-11T16:37:27.684322"
     },
     "multiqc": {
@@ -76,10 +68,6 @@
             "multiqc_fastp.txt:md5,d65cc0ccd033e949132c2e46b1f81717",
             "multiqc_bcl2fastq_bysample.txt:md5,1865f27f430d153085b26c86320718fe"
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
         "timestamp": "2023-12-11T16:55:21.680453"
     }
 }
diff --git a/tests/pipeline/bclconvert.nf.test.snap b/tests/pipeline/bclconvert.nf.test.snap
@@ -20,32 +20,20 @@
                 "fastq_list.csv:md5,05bc84f51840f5754cfb8381b36f2cb0"
             ]
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
         "timestamp": "2023-12-11T16:38:54.135338"
     },
     "software_versions": {
         "content": [
-            "{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
+            "{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
-        "timestamp": "2024-05-15T01:34:10.930524"
+        "timestamp": "2024-05-16T08:36:09.489747"
     },
     "multiqc": {
         "content": [
             "multiqc_bclconvert_bylane.txt:md5,c796947c68cf713a8b7ef8066a7b4ec7",
             "multiqc_fastp.txt:md5,d65cc0ccd033e949132c2e46b1f81717",
             "multiqc_bclconvert_bysample.txt:md5,07048c9b73ed85bdac03c476b192c4e3"
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
         "timestamp": "2024-05-15T01:34:10.988849"
     }
 }
diff --git a/tests/pipeline/fqtk.nf.test.snap b/tests/pipeline/fqtk.nf.test.snap
@@ -3,20 +3,12 @@
         "content": [
             "demux-metrics.txt:md5,1d587fa959f9129155314cf531103347"
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
         "timestamp": "2023-10-17T08:06:53+0000"
     },
     "software_versions": {
         "content": [
-            "{FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, FQTK={fqtk=0.2.1}, MD5SUM={md5sum=8.3}, UNTAR={untar=1.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
+            "{FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, FQTK={fqtk=0.2.1}, MD5SUM={md5sum=8.3}, UNTAR={untar=1.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
-        "timestamp": "2024-05-15T03:01:59.608315"
+        "timestamp": "2024-05-16T08:44:12.032652"
     }
 }
diff --git a/tests/pipeline/sgdemux.nf.test.snap b/tests/pipeline/sgdemux.nf.test.snap
@@ -1,13 +1,9 @@
 {
     "software_versions": {
         "content": [
-            "{FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, SGDEMUX={sgdemux=1.1.1}, UNTAR={untar=1.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
+            "{FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, SGDEMUX={sgdemux=1.1.1}, UNTAR={untar=1.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
-        "timestamp": "2024-05-15T03:07:02.261713"
+        "timestamp": "2024-05-16T08:38:19.437888"
     },
     "sgdemux": {
         "content": [
@@ -16,10 +12,6 @@
             "per_sample_metrics.tsv:md5,fb8ce024ad2508e7b22a4af65fe44358",
             "sample_barcode_hop_metrics.tsv:md5,d41d8cd98f00b204e9800998ecf8427e"
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
         "timestamp": "2023-10-17T08:01:14+0000"
     }
 }
diff --git a/tests/pipeline/skip_tools.nf.test.snap b/tests/pipeline/skip_tools.nf.test.snap
@@ -1,13 +1,9 @@
 {
     "software_versions_skip_trimming": {
         "content": [
-            "{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
+            "{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
-        "timestamp": "2024-05-15T03:10:25.288393"
+        "timestamp": "2024-05-16T08:39:34.361632"
     },
     "skip_fastqc": {
         "content": [
@@ -29,10 +25,6 @@
                 "fastq_list.csv:md5,05bc84f51840f5754cfb8381b36f2cb0"
             ]
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
         "timestamp": "2023-12-11T16:45:17.736105"
     },
     "skip_fastp": {
@@ -55,10 +47,6 @@
                 "fastq_list.csv:md5,05bc84f51840f5754cfb8381b36f2cb0"
             ]
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
         "timestamp": "2023-12-11T16:43:54.005346"
     },
     "skip_multiqc": {
@@ -81,10 +69,6 @@
                 "fastq_list.csv:md5,05bc84f51840f5754cfb8381b36f2cb0"
             ]
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
         "timestamp": "2023-12-11T16:47:17.03681"
     },
     "skip_fastp_fastqc": {
@@ -107,51 +91,31 @@
                 "fastq_list.csv:md5,05bc84f51840f5754cfb8381b36f2cb0"
             ]
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
         "timestamp": "2023-12-11T16:46:00.460287"
     },
     "software_versions_skip_fastqc": {
         "content": [
-            "{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
+            "{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
-        "timestamp": "2024-05-15T03:12:02.414276"
+        "timestamp": "2024-05-16T08:41:12.480795"
     },
     "software_versions_skip_fastp_fastqc": {
         "content": [
-            "{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
+            "{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
-        "timestamp": "2024-05-15T03:12:31.957377"
+        "timestamp": "2024-05-16T08:41:37.617916"
     },
     "software_versions_skip_multiqc": {
         "content": [
-            "{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
+            "{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, FASTP={fastp=0.23.4}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
-        "timestamp": "2024-05-15T03:26:41.590674"
+        "timestamp": "2024-05-16T08:42:46.504885"
     },
     "software_versions_skip_fastp": {
         "content": [
-            "{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.4.1}}"
+            "{BCLCONVERT={bclconvert=00.000.000.4.2.7}, FALCO={falco=1.2.1}, MD5SUM={md5sum=8.3}, Workflow={nf-core/demultiplex=v1.5.0dev}}"
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
-        "timestamp": "2024-05-15T03:10:54.678632"
+        "timestamp": "2024-05-16T08:40:02.626844"
     },
     "skip_trimming": {
         "content": [
@@ -173,10 +137,6 @@
                 "fastq_list.csv:md5,05bc84f51840f5754cfb8381b36f2cb0"
             ]
         ],
-        "meta": {
-            "nf-test": "0.8.4",
-            "nextflow": "23.10.1"
-        },
         "timestamp": "2023-12-11T16:43:15.513271"
     }
 }