Release 2.7.0 #648
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Release 2.7.0 #648
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…e/summary_report
bump-version-2.7.0dev
…e/summary_report
Add support for PR2 version 5 to SBDI export
Co-authored-by: Daniel Lundin <[email protected]>
Update pipeline summary report
Co-authored-by: Daniel Lundin <[email protected]>
Update workflow overview figure & docs
Update dependencies
Prepare 2.7.0 release
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erikrikarddaniel
approved these changes
Oct 18, 2023
tillenglert
approved these changes
Oct 19, 2023
docs/images/ampliseq_workflow.png
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I think the taxonomic classification: Kraken2 option kind of gets lost! Is there a module or multiple modules? then at least there is more to it than just the header.
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Yes, it does get lost. There are three modules involved, UNTAR, KRAKEN2_KRAKEN2, and FORMAT_TAXRESULTS_KRAKEN2. None of those seem to add valuable information to the figure. I do not have a solution to it for now.
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Yes that's true! Maybe when more tools are included one could make it more apparent! :)
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Yes, probably the whole figure needs to be re-designed and rather exclude the details and focus on tasks or tools instead. Thats for another time ;)
Co-authored-by: Till E. <[email protected]>
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Hm tests are failing because |
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This is for release 2.7.0.
Most notable changes:
--inputinto 3 parameters,--inputnow points to a sampleheet, alternatives are--input_fasta&--input_folderto accommodate nf-validation'sfromSamplesheetMore details in the CHANGELOG
PR checklist
nf-core lint).nextflow run . -profile test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).