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Update nextflow_schema.json #621

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Aug 18, 2023
Merged

Update nextflow_schema.json #621

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2 changes: 1 addition & 1 deletion nextflow_schema.json
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Original file line number Diff line number Diff line change
Expand Up @@ -347,7 +347,7 @@
},
"sintax_ref_taxonomy": {
"type": "string",
"help_text": "Choose any of the supported databases, and optionally also specify the version. Database and version are separated by an equal sign (`=`, e.g. `coidb=221216`) . This will download the desired database and initiate taxonomic classification with USEARCH sintax and the chosen database, which if needed is formatted to produce a file that is compatible with USEARCH sintax.\n\nThe following databases are supported:\n- COIDB - eukaryotic Cytochrome Oxidase I (COI) from The Barcode of Life Data System (BOLD) - COI\n- UNITE - eukaryotic nuclear ribosomal ITS region - ITS\n\nGenerally, using `coidb`, `unite-fungi`, or `unite-alleuk` will select the most recent supported version. For details on what values are valid, please either use an invalid value such as `x` (causing the pipeline to send an error message with a list of all valid values) or see `conf/ref_databases.config`.",
"help_text": "Choose any of the supported databases, and optionally also specify the version. Database and version are separated by an equal sign (`=`, e.g. `coidb=221216`) . This will download the desired database and initiate taxonomic classification with VSEARCH sintax and the chosen database, which if needed is formatted to produce a file that is compatible with VSEARCH sintax.\n\nThe following databases are supported:\n- COIDB - eukaryotic Cytochrome Oxidase I (COI) from The Barcode of Life Data System (BOLD) - COI\n- UNITE - eukaryotic nuclear ribosomal ITS region - ITS\n\nGenerally, using `coidb`, `unite-fungi`, or `unite-alleuk` will select the most recent supported version. For details on what values are valid, please either use an invalid value such as `x` (causing the pipeline to send an error message with a list of all valid values) or see `conf/ref_databases.config`.",
"description": "Name of supported database, and optionally also version number",
"enum": [
"coidb",
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