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Release 4.0.0 #325

Merged
merged 33 commits into from
Apr 23, 2024
Merged

Release 4.0.0 #325

merged 33 commits into from
Apr 23, 2024

Commits on Mar 31, 2024

  1. Merge pull request #317 from nf-core/master 

    Fix badges in master
    @ggabernet
    ggabernet authored Mar 31, 2024
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Commits on Apr 11, 2024

  1. fix test full run

    @ggabernet
    ggabernet committed Apr 11, 2024
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  2. fix nebnext_umi_tcr profile

    @ggabernet
    ggabernet committed Apr 11, 2024
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  3. update changelog

    @ggabernet
    ggabernet committed Apr 11, 2024
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  4. fix execute parse logs

    @ggabernet
    ggabernet committed Apr 11, 2024
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  5. add airr compliance badge

    @ggabernet
    ggabernet committed Apr 11, 2024
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  6. Add description AIRR compliant

    @ggabernet
    ggabernet committed Apr 11, 2024
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Commits on Apr 12, 2024

  1. Merge pull request #319 from ggabernet/dev 

    Minor bug fixes
    @ggabernet
    ggabernet authored Apr 12, 2024
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  2. Dowser tips by isotype

    @ggabernet
    ggabernet committed Apr 12, 2024
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  3. update changelog

    @ggabernet
    ggabernet committed Apr 12, 2024
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  4. isotype also for full test

    @ggabernet
    ggabernet committed Apr 12, 2024
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Commits on Apr 16, 2024

  1. Merge pull request #321 from ggabernet/dev 

    Dowser tips by isotype
    @ggabernet
    ggabernet authored Apr 16, 2024
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Commits on Apr 22, 2024

  1. use raxml by default

    @ggabernet
    ggabernet committed Apr 22, 2024
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  2. Merge branch 'dev' of github.com:ggabernet/nf-core-airrflow into dev

    @ggabernet
    ggabernet committed Apr 22, 2024
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  3. fix test full config

    @ggabernet
    ggabernet committed Apr 22, 2024
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  4. update enchantr version

    @ggabernet
    ggabernet committed Apr 22, 2024
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  5. fix prettier

    @ggabernet
    ggabernet committed Apr 22, 2024
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  6. more raxml changes

    @ggabernet
    ggabernet committed Apr 22, 2024
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  7. add profile info to readme

    @ggabernet
    ggabernet committed Apr 22, 2024
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  8. fix comma

    @ggabernet
    ggabernet committed Apr 22, 2024
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  9. skip lineage trees by default

    @ggabernet
    ggabernet committed Apr 22, 2024
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  10. change version to 4.0.0

    @ggabernet
    ggabernet committed Apr 22, 2024
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  11. oops fix container tag

    @ggabernet
    ggabernet committed Apr 22, 2024
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  12. Merge pull request #324 from ggabernet/dev 

    Make RAxML default, use profile for full size test
    @ggabernet
    ggabernet authored Apr 22, 2024
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  13. revert changes test full

    @ggabernet
    ggabernet committed Apr 22, 2024
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  14. Merge pull request #327 from ggabernet/dev 

    Revert changes test_full
    @ggabernet
    ggabernet authored Apr 22, 2024
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  15. Deprecate igblast_base and imgtdb_base params

    @ggabernet
    ggabernet committed Apr 22, 2024
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Commits on Apr 23, 2024

  1. fix full size test

    @ggabernet
    ggabernet committed Apr 23, 2024
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  2. fix test full

    @ggabernet
    ggabernet committed Apr 23, 2024
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  3. Merge pull request #329 from ggabernet/fix-profile 

    Fix test full profile
    @ggabernet
    ggabernet authored Apr 23, 2024
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  4. Merge upstream dev

    @ggabernet
    ggabernet committed Apr 23, 2024
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  5. update unzip fasta name

    @ggabernet
    ggabernet committed Apr 23, 2024
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  6. Merge pull request #328 from ggabernet/dev 

    Update germline reference parameters
    @ggabernet
    ggabernet authored Apr 23, 2024
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