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Remove gisaid_epi_isl from auspice_config JSONs
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Temporarily dropping `gisaid_epi_isl` after discussion on Slack¹
about the duplicate accessions we are seeing with cell/egg passaged
sequences. Once we update the data model to accurately link virus
record and sequence record, we can add it back.

¹ <https://bedfordlab.slack.com/archives/C03KWDET9/p1729271930916079>
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joverlee521 committed Oct 18, 2024
1 parent 3b7ce7a commit d81a8c3
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Showing 11 changed files with 0 additions and 11 deletions.
1 change: 0 additions & 1 deletion config/h1n1pdm/auspice_config.json
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"frequencies"
],
"metadata_columns": [
"gisaid_epi_isl",
"accession_ha",
"accession_na"
]
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1 change: 0 additions & 1 deletion config/h1n1pdm/ha/auspice_config.json
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"frequencies"
],
"metadata_columns": [
"gisaid_epi_isl",
"accession_ha",
"accession_na"
]
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1 change: 0 additions & 1 deletion config/h1n1pdm/na/auspice_config.json
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"frequencies"
],
"metadata_columns": [
"gisaid_epi_isl",
"accession_ha",
"accession_na"
]
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1 change: 0 additions & 1 deletion config/h3n2/auspice_config.json
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Expand Up @@ -166,7 +166,6 @@
"frequencies"
],
"metadata_columns": [
"gisaid_epi_isl",
"accession_ha",
"accession_na"
]
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1 change: 0 additions & 1 deletion config/h3n2/auspice_config_fitness.json
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Expand Up @@ -154,7 +154,6 @@
"frequencies"
],
"metadata_columns": [
"gisaid_epi_isl",
"accession_ha",
"accession_na"
]
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1 change: 0 additions & 1 deletion config/h3n2/ha/auspice_config.json
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Expand Up @@ -248,7 +248,6 @@
"frequencies"
],
"metadata_columns": [
"gisaid_epi_isl",
"accession_ha",
"accession_na"
]
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1 change: 0 additions & 1 deletion config/h3n2/na/auspice_config.json
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Expand Up @@ -181,7 +181,6 @@
"frequencies"
],
"metadata_columns": [
"gisaid_epi_isl",
"accession_ha",
"accession_na"
]
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1 change: 0 additions & 1 deletion config/vic/auspice_config.json
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Expand Up @@ -141,7 +141,6 @@
"frequencies"
],
"metadata_columns": [
"gisaid_epi_isl",
"accession_ha",
"accession_na"
]
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1 change: 0 additions & 1 deletion config/vic/ha/auspice_config.json
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Expand Up @@ -188,7 +188,6 @@
"frequencies"
],
"metadata_columns": [
"gisaid_epi_isl",
"accession_ha",
"accession_na"
]
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1 change: 0 additions & 1 deletion config/vic/na/auspice_config.json
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Expand Up @@ -181,7 +181,6 @@
"frequencies"
],
"metadata_columns": [
"gisaid_epi_isl",
"accession_ha",
"accession_na"
]
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1 change: 0 additions & 1 deletion config/yam/auspice_config.json
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Expand Up @@ -119,7 +119,6 @@
"frequencies"
],
"metadata_columns": [
"gisaid_epi_isl",
"accession_ha",
"accession_na"
]
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