Add subclades to nextflu-private builds

nextstrain · Aug 24, 2023 · 76ae432 · 76ae432
1 parent 52fa566
commit 76ae432
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/profiles/nextflu-private.yaml b/profiles/nextflu-private.yaml
@@ -51,6 +51,7 @@ builds:
     annotation: "config/h1n1pdm/{segment}/genemap.gff"
     tree_exclude_sites: "config/h1n1pdm/{segment}/exclude-sites.txt"
     clades: "config/h1n1pdm/ha/clades.tsv"
+    subclades: "config/h1n1pdm/{segment}/subclades.tsv"
     auspice_config: "profiles/nextflu-private/h1n1pdm/{segment}/auspice_config.json"
     min_date: "2Y"
     reference_min_date: "6Y"
@@ -98,6 +99,7 @@ builds:
     annotation: "config/h3n2/{segment}/genemap.gff"
     tree_exclude_sites: "config/h3n2/{segment}/exclude-sites.txt"
     clades: "config/h3n2/ha/clades.tsv"
+    subclades: "config/h3n2/{segment}/subclades.tsv"
     auspice_config: "profiles/nextflu-private/h3n2/{segment}/auspice_config.json"
     vaccines: "config/h3n2/vaccine.json"
     enable_glycosylation: true
@@ -142,6 +144,7 @@ builds:
     annotation: "config/h3n2/{segment}/genemap.gff"
     tree_exclude_sites: "config/h3n2/{segment}/exclude-sites.txt"
     clades: "config/h3n2/ha/clades.tsv"
+    subclades: "config/h3n2/{segment}/subclades.tsv"
     auspice_config: "profiles/nextflu-private/h3n2/{segment}/auspice_config.json"
     vaccines: "config/h3n2/vaccine.json"
     enable_glycosylation: true
@@ -178,6 +181,7 @@ builds:
     annotation: "config/vic/{segment}/genemap.gff"
     tree_exclude_sites: "config/vic/{segment}/exclude-sites.txt"
     clades: "profiles/nextflu-private/vic/ha/clades.tsv"
+    subclades: "config/vic/{segment}/subclades.tsv"
     auspice_config: "profiles/nextflu-private/vic/{segment}/auspice_config.json"
     min_date: "2Y"
     reference_min_date: "6Y"