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/pathogens: Add tiles for all pathogens #1033

Closed
Tracked by #1034
victorlin opened this issue Sep 30, 2024 · 3 comments · Fixed by #1034
Closed
Tracked by #1034

/pathogens: Add tiles for all pathogens #1033

victorlin opened this issue Sep 30, 2024 · 3 comments · Fixed by #1034
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@victorlin
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victorlin commented Sep 30, 2024

continuing from #940 (comment):

the best thing for nextstrain.org/pathogens is to include a tile for every pathogen

Requirements

  • Add missing entries for Lassa, Seasonal cov, Tuberculosis, West Nile Virus, Nextclade (?)
  • Sort alphabetically
  • Rename "Showcase" to something else (since it is all listings, not a select few as originally intended)
@victorlin victorlin self-assigned this Sep 30, 2024
@victorlin
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nextclade/sars-cov-2 is an odd one:

image

Maybe it can be represented by a tile like SARS-CoV-2 (Nextclade)? This would only make sense as long as there is no other nextclade/*.

@trvrb
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trvrb commented Oct 3, 2024

My desire would be for every nextclade dataset to be represented at /nextclade. Right now I find myself going to clades.nextstrain.org and picking a reference pathogen and example dataset if I want to see the nextclade reference tree for a particular nextclade dataset. I don't know how easy including an automated push to data.nextstrain.org as part of the release process for nextclade datasets would be. Having these pushed to data.nextstrain.org would have the added benefit of easily looking at past versions, eg https://nextstrain.org/nextclade/sars-cov-2@2024-01-01 cc @rneher and @corneliusroemer

@victorlin: My sense is that a tile that says SARS-CoV-2 (Nextclade) is a fine solution for your PR. It may get revised to Nextclade in the future.

@victorlin
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My desire would be for every nextclade dataset to be represented at /nextclade

Continuing in #1037

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