Update emerging lineages

This drops BA.1.1 and BA.2.3 as they are clearly not competitive with BA.4, BA.5 and other recent viruses. This adds BA.2.75 using defining mutations A22001G (S:K147E) and T22016C (S:W152R) to correspond with Pango designation: cov-lineages/pango-designation#773 (comment)
nextstrain · Jul 5, 2022 · b994cea · b994cea
1 parent 5df879b
commit b994cea
Showing 1 changed file with 38 additions and 52 deletions.
diff --git a/defaults/emerging_lineages.tsv b/defaults/emerging_lineages.tsv
@@ -1,57 +1,5 @@
 clade	gene	site	alt
 
-BA.1.1	nuc	8782	C
-BA.1.1	nuc	14408	T
-BA.1.1	nuc	18163	G
-BA.1.1	nuc	23403	G
-BA.1.1	nuc	28881	A
-BA.1.1	nuc	28882	A
-BA.1.1	nuc	15240	T
-BA.1.1	nuc	23202	A
-BA.1.1	nuc	23525	T
-BA.1.1	nuc	23599	G
-BA.1.1	nuc	27259	C
-BA.1.1	nuc	2470	T
-BA.1.1	nuc	22599	A
-
-BA.2.3	nuc	8782	C
-BA.2.3	nuc	14408	T
-BA.2.3	nuc	18163	G
-BA.2.3	nuc	23403	G
-BA.2.3	nuc	28881	A
-BA.2.3	nuc	28882	A
-BA.2.3	nuc	21618	T
-BA.2.3	nuc	22775	A
-BA.2.3	nuc	23599	G
-BA.2.3	nuc	8991	T
-BA.2.3	nuc	25810	T
-
-BA.4	nuc	8782	C
-BA.4	nuc	14408	T
-BA.4	nuc	18163	G
-BA.4	nuc	23403	G
-BA.4	nuc	28881	A
-BA.4	nuc	28882	A
-BA.4	nuc	21618	T
-BA.4	nuc	22775	A
-BA.4	nuc	23599	G
-BA.4	nuc	12160	A
-BA.4	nuc	9866	C
-BA.4	nuc	27788	T
-
-BA.5	nuc	8782	C
-BA.5	nuc	14408	T
-BA.5	nuc	18163	G
-BA.5	nuc	23403	G
-BA.5	nuc	28881	A
-BA.5	nuc	28882	A
-BA.5	nuc	21618	T
-BA.5	nuc	22775	A
-BA.5	nuc	23599	G
-BA.5	nuc	12160	A
-BA.5	nuc	9866	C
-BA.5	nuc	27259	A
-
 BA.2.9.1	nuc	8782	C
 BA.2.9.1	nuc	14408	T
 BA.2.9.1	nuc	18163	G
@@ -101,3 +49,41 @@ BA.2.13	nuc	22775	A
 BA.2.13	nuc	23599	G
 BA.2.13	nuc	22917	A
 BA.2.13	nuc	7820	C
+
+BA.2.75	nuc	8782	C
+BA.2.75	nuc	14408	T
+BA.2.75	nuc	18163	G
+BA.2.75	nuc	23403	G
+BA.2.75	nuc	28881	A
+BA.2.75	nuc	28882	A
+BA.2.75	nuc	21618	T
+BA.2.75	nuc	22775	A
+BA.2.75	nuc	23599	G
+BA.2.75	nuc	22001	G
+BA.2.75	nuc	22016	C
+
+BA.4	nuc	8782	C
+BA.4	nuc	14408	T
+BA.4	nuc	18163	G
+BA.4	nuc	23403	G
+BA.4	nuc	28881	A
+BA.4	nuc	28882	A
+BA.4	nuc	21618	T
+BA.4	nuc	22775	A
+BA.4	nuc	23599	G
+BA.4	nuc	12160	A
+BA.4	nuc	9866	C
+BA.4	nuc	27788	T
+
+BA.5	nuc	8782	C
+BA.5	nuc	14408	T
+BA.5	nuc	18163	G
+BA.5	nuc	23403	G
+BA.5	nuc	28881	A
+BA.5	nuc	28882	A
+BA.5	nuc	21618	T
+BA.5	nuc	22775	A
+BA.5	nuc	23599	G
+BA.5	nuc	12160	A
+BA.5	nuc	9866	C
+BA.5	nuc	27259	A