Remove version columns #468
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Now that we are creating a Nextclade version JSON for the Nextclade TSV, we can use it to fetch the cache version. If the Nextclade TSV sha256sum doesn't match the value in the version JSON, then we ignore the version JSON which results in the workflow ignoring the Nextclade cache.
We now check the Nextclade versions using the separate version JSON, so we no longer need to track version per row. This is a breaking change for the cache, so will need to be run with the renew flag to manually force a full-rerun.
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I plan on doing more thorough testing on this next week but wanted to get people's eyes on this to make sure we are okay with removing the extra Nextclade version columns. I don't think anyone is using the version columns for downstream work, but wanted to double check. |
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Description of proposed changes
Updates the cache version check to use the version JSON added in #467 and removes the version columns from the Nextclade TSV.
Removal of the version columns should be considered a breaking change for the Nextclade cache. Once merged, this will need to be run with the renew flags to manually force a full-rerun.
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