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Install jaxlib from PyPI on linux/arm64 #186

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Oct 9, 2023
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Install jaxlib from PyPI on linux/arm64 #186

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16 changes: 0 additions & 16 deletions Dockerfile
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Expand Up @@ -253,19 +253,6 @@ RUN apt-get update && apt-get install -y --no-install-recommends \

# 1. Install programs via pip

# Install jaxlib & jax on linux/arm64
# jaxlib, an evofr dependency, does not have official pre-built binaries for
# linux/arm64. A GitHub user has provided them in a fork repo.
# https://github.com/google/jax/issues/7097#issuecomment-1110730040
# Also hard-coding jax version here since it needs to match the jaxlib version
# The minimum version requirement for jaxlib is checked at runtime rather than by pip
# https://jax.readthedocs.io/en/latest/jep/9419-jax-versioning.html#how-are-jax-and-jaxlib-versioned
RUN if [[ "$TARGETPLATFORM" == linux/arm64 ]]; then \
pip3 install https://github.com/yoziru/jax/releases/download/jaxlib-v0.4.6/jaxlib-0.4.6-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.whl \
jax==0.4.6 \
; \
fi

# Install envdir, which is used by pathogen builds
RUN pip3 install envdir==1.0.1

Expand Down Expand Up @@ -358,9 +345,6 @@ RUN /builder-scripts/download-repo https://github.com/nextstrain/augur "$(/build
&& pip3 install --editable .

# Add evofr for forecasting
# NOTE: if there is an issue with the evofr installation on linux/arm64, make
# sure to check that the jaxlib installation above satisfies the latest evofr
# dependency requirements.
RUN pip3 install evofr

# ———————————————————————————————————————————————————————————————————— #
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