[simplify maintainence] Remove bin/scripts duplication

If a script does not need to be modified for a pathogen ingest, pull script during runtime instead of maintaining a potentially diverging copy. https://www.oreilly.com/library/view/building-maintainable-software/9781491955987/ch04.html Use a permalink for each script to allow us to version the software we use in this workflow without being affected by upstream changes until we want to bump the version. This design adds more maintenance to this workflow, but it also protects users against unexpected issues that are outside of their control. Discussed in nextstrain/ebola#6 (comment) However, this commit gets reverted later based on discussions.
nextstrain · May 5, 2023 · 67e01b9 · 67e01b9
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diff --git a/ingest/bin/apply-geolocation-rules b/ingest/bin/apply-geolocation-rules
diff --git a/ingest/bin/cloudfront-invalidate b/ingest/bin/cloudfront-invalidate
diff --git a/ingest/bin/csv-to-ndjson b/ingest/bin/csv-to-ndjson
diff --git a/ingest/bin/download-from-s3 b/ingest/bin/download-from-s3