This is the source code repository for a program called nextstrain, the
Nextstrain command-line interface (CLI). It aims to provide a consistent way
to run and visualize pathogen builds and access Nextstrain components like
Augur and Auspice across computing platforms such as Docker,
Conda, Singularity, and AWS Batch.
Get started using the Nextstrain CLI by reading the documentation, which includes installation and usage information.
If you'd like to contribute to development, the development docs should help you get going. We're glad you'd like to contribute!
If you need help (or just want to say hi!), open an issue or send us an email to [email protected].