Remove metadata download from GISAID datasets #1366
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This commit uses dataProvenance in metadata to identify datasets using "GISAID" data. For these datasets, the full metadata download is swapped to an "acknowledgments" download that only includes the following fields: - strain - gisaid_epi_isl - genbank_accession - originating_lab - submitting_lab - author
This was referenced Jul 3, 2021
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Description of proposed changes
This commit uses
dataProvenanceinmetadatato identify datasets using "GISAID" data. For these datasets, the full metadata download is swapped to an "acknowledgments" download that only includes the following fields:straingisaid_epi_islgenbank_accessionoriginating_labsubmitting_labauthorThis should fulfill GISAID's request to not allow download of metadata table from data sourced from GISAID.
Testing
This has been tested locally and downloaded TSVs examined. Testing was done on datasets that are specified with GISAID provenance vs datasets without.