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4 changes: 2 additions & 2 deletions docs/introduction/install.html
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You can also use the Windows Subsystem Linux for a fuller Linux environment.</p>
<h2><a class="anchor" aria-hidden="true" id="create-a-conda-environment"></a><a href="#create-a-conda-environment" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Create a Conda Environment</h2>
<pre><code class="hljs css language-bash">conda create --name auspice nodejs=10
<span class="hljs-built_in">source</span> activate auspice
conda activate auspice
</code></pre>
<blockquote>
<p>This parallels <a href="https://nextstrain.org/docs/getting-started/local-installation#install-augur--auspice-with-conda-recommended">the Nextstrain installation docs</a>.
Expand Down Expand Up @@ -105,4 +105,4 @@ <h2><a class="anchor" aria-hidden="true" id="installing-from-source"></a><a href
</code></pre>
<p>Updating Auspice should only require pulling the new version from GitHub -- it shouldn't require any <code>npm</code> commands.
You will, however, have to re-build Auspice whenever the client-related code has changed, via <code>auspice build</code>.</p>
</span></div></article></div><div class="docLastUpdate"><em>Last updated on 3/24/2020</em></div><div class="docs-prevnext"><a class="docs-prev button" href="/auspice/introduction/overview"><span class="arrow-prev">← </span><span>Overview</span></a><a class="docs-next button" href="/auspice/introduction/how-to-run"><span>How to Run Auspice</span><span class="arrow-next"> →</span></a></div></div></div><nav class="onPageNav"><ul class="toc-headings"><li><a href="#prerequisites">Prerequisites</a></li><li><a href="#create-a-conda-environment">Create a Conda Environment</a></li><li><a href="#install-auspice-from-npm">Install Auspice from npm</a></li><li><a href="#installing-from-source">Installing from Source</a></li></ul></nav></div><footer class="nav-footer" id="footer"><section class="sitemap"><div><a href="/auspice/"><img style="padding-left:20px" src="/auspice/img/logo-light.svg" alt="Auspice" width="66" height="58"/></a></div><div><h5>External Links</h5><a href="https://github.com/nextstrain/auspice">GitHub repo</a><a href="https://www.npmjs.com/package/auspice">NPM package</a><a href="https://nextstrain.org">Nextstrain</a></div><div><h5>Contact Us</h5><a href="mailto:[email protected]">email</a><a href="https://twitter.com/hamesjadfield">twitter</a></div></section><section class="copyright">Website built by <a href="https://twitter.com/hamesjadfield">James Hadfield</a> using <a href="https://docusaurus.io">Docusaurus</a></section><section class="copyright">If you use auspice, please cite <a href="https://doi.org/10.1093/bioinformatics/bty407">Hadfield et al., 2018</a></section><section class="copyright">Copyright © 2014-2020 Richard Neher &amp; Trevor Bedford</section></footer></div></body></html>
</span></div></article></div><div class="docLastUpdate"><em>Last updated on 3/28/2020</em></div><div class="docs-prevnext"><a class="docs-prev button" href="/auspice/introduction/overview"><span class="arrow-prev">← </span><span>Overview</span></a><a class="docs-next button" href="/auspice/introduction/how-to-run"><span>How to Run Auspice</span><span class="arrow-next"> →</span></a></div></div></div><nav class="onPageNav"><ul class="toc-headings"><li><a href="#prerequisites">Prerequisites</a></li><li><a href="#create-a-conda-environment">Create a Conda Environment</a></li><li><a href="#install-auspice-from-npm">Install Auspice from npm</a></li><li><a href="#installing-from-source">Installing from Source</a></li></ul></nav></div><footer class="nav-footer" id="footer"><section class="sitemap"><div><a href="/auspice/"><img style="padding-left:20px" src="/auspice/img/logo-light.svg" alt="Auspice" width="66" height="58"/></a></div><div><h5>External Links</h5><a href="https://github.com/nextstrain/auspice">GitHub repo</a><a href="https://www.npmjs.com/package/auspice">NPM package</a><a href="https://nextstrain.org">Nextstrain</a></div><div><h5>Contact Us</h5><a href="mailto:[email protected]">email</a><a href="https://twitter.com/hamesjadfield">twitter</a></div></section><section class="copyright">Website built by <a href="https://twitter.com/hamesjadfield">James Hadfield</a> using <a href="https://docusaurus.io">Docusaurus</a></section><section class="copyright">If you use auspice, please cite <a href="https://doi.org/10.1093/bioinformatics/bty407">Hadfield et al., 2018</a></section><section class="copyright">Copyright © 2014-2020 Richard Neher &amp; Trevor Bedford</section></footer></div></body></html>
4 changes: 2 additions & 2 deletions docs/introduction/install/index.html
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Expand Up @@ -65,7 +65,7 @@
You can also use the Windows Subsystem Linux for a fuller Linux environment.</p>
<h2><a class="anchor" aria-hidden="true" id="create-a-conda-environment"></a><a href="#create-a-conda-environment" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Create a Conda Environment</h2>
<pre><code class="hljs css language-bash">conda create --name auspice nodejs=10
<span class="hljs-built_in">source</span> activate auspice
conda activate auspice
</code></pre>
<blockquote>
<p>This parallels <a href="https://nextstrain.org/docs/getting-started/local-installation#install-augur--auspice-with-conda-recommended">the Nextstrain installation docs</a>.
Expand Down Expand Up @@ -105,4 +105,4 @@ <h2><a class="anchor" aria-hidden="true" id="installing-from-source"></a><a href
</code></pre>
<p>Updating Auspice should only require pulling the new version from GitHub -- it shouldn't require any <code>npm</code> commands.
You will, however, have to re-build Auspice whenever the client-related code has changed, via <code>auspice build</code>.</p>
</span></div></article></div><div class="docLastUpdate"><em>Last updated on 3/24/2020</em></div><div class="docs-prevnext"><a class="docs-prev button" href="/auspice/introduction/overview"><span class="arrow-prev">← </span><span>Overview</span></a><a class="docs-next button" href="/auspice/introduction/how-to-run"><span>How to Run Auspice</span><span class="arrow-next"> →</span></a></div></div></div><nav class="onPageNav"><ul class="toc-headings"><li><a href="#prerequisites">Prerequisites</a></li><li><a href="#create-a-conda-environment">Create a Conda Environment</a></li><li><a href="#install-auspice-from-npm">Install Auspice from npm</a></li><li><a href="#installing-from-source">Installing from Source</a></li></ul></nav></div><footer class="nav-footer" id="footer"><section class="sitemap"><div><a href="/auspice/"><img style="padding-left:20px" src="/auspice/img/logo-light.svg" alt="Auspice" width="66" height="58"/></a></div><div><h5>External Links</h5><a href="https://github.com/nextstrain/auspice">GitHub repo</a><a href="https://www.npmjs.com/package/auspice">NPM package</a><a href="https://nextstrain.org">Nextstrain</a></div><div><h5>Contact Us</h5><a href="mailto:[email protected]">email</a><a href="https://twitter.com/hamesjadfield">twitter</a></div></section><section class="copyright">Website built by <a href="https://twitter.com/hamesjadfield">James Hadfield</a> using <a href="https://docusaurus.io">Docusaurus</a></section><section class="copyright">If you use auspice, please cite <a href="https://doi.org/10.1093/bioinformatics/bty407">Hadfield et al., 2018</a></section><section class="copyright">Copyright © 2014-2020 Richard Neher &amp; Trevor Bedford</section></footer></div></body></html>
</span></div></article></div><div class="docLastUpdate"><em>Last updated on 3/28/2020</em></div><div class="docs-prevnext"><a class="docs-prev button" href="/auspice/introduction/overview"><span class="arrow-prev">← </span><span>Overview</span></a><a class="docs-next button" href="/auspice/introduction/how-to-run"><span>How to Run Auspice</span><span class="arrow-next"> →</span></a></div></div></div><nav class="onPageNav"><ul class="toc-headings"><li><a href="#prerequisites">Prerequisites</a></li><li><a href="#create-a-conda-environment">Create a Conda Environment</a></li><li><a href="#install-auspice-from-npm">Install Auspice from npm</a></li><li><a href="#installing-from-source">Installing from Source</a></li></ul></nav></div><footer class="nav-footer" id="footer"><section class="sitemap"><div><a href="/auspice/"><img style="padding-left:20px" src="/auspice/img/logo-light.svg" alt="Auspice" width="66" height="58"/></a></div><div><h5>External Links</h5><a href="https://github.com/nextstrain/auspice">GitHub repo</a><a href="https://www.npmjs.com/package/auspice">NPM package</a><a href="https://nextstrain.org">Nextstrain</a></div><div><h5>Contact Us</h5><a href="mailto:[email protected]">email</a><a href="https://twitter.com/hamesjadfield">twitter</a></div></section><section class="copyright">Website built by <a href="https://twitter.com/hamesjadfield">James Hadfield</a> using <a href="https://docusaurus.io">Docusaurus</a></section><section class="copyright">If you use auspice, please cite <a href="https://doi.org/10.1093/bioinformatics/bty407">Hadfield et al., 2018</a></section><section class="copyright">Copyright © 2014-2020 Richard Neher &amp; Trevor Bedford</section></footer></div></body></html>
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