feat: allow reconstruction of amino acid sequences #1570

Job	Run time
test (python=3.7 biopython=1.73)	11m 40s
test (python=3.7 biopython=1.76)	9m 44s
test (python=3.7 biopython=1.79)	9m 19s
test (python=3.7 biopython=latest)	9m 52s
test (python=3.8 biopython=1.76)	10m 23s
test (python=3.8 biopython=1.79)	12m 23s
test (python=3.8 biopython=1.80)	12m 46s
test (python=3.8 biopython=latest)	13m 35s
test (python=3.9 biopython=1.79)	10m 42s
test (python=3.9 biopython=1.80)	12m 31s
test (python=3.9 biopython=latest)	10m 18s
test (python=3.10 biopython=1.80)	10m 59s
test (python=3.10 biopython=latest)	14m 29s
test (python=3.11 biopython=1.80)	10m 25s
test (python=3.11 biopython=latest)	12m 14s
test-pathogen-repo-ci (avian-flu)	1m 10s
test-pathogen-repo-ci (ebola)	1m 6s
test-pathogen-repo-ci (lassa)	1m 11s
test-pathogen-repo-ci (monkeypox)	1m 43s
test-pathogen-repo-ci (mumps)	1m 43s
test-pathogen-repo-ci (ncov)	1m 42s
test-pathogen-repo-ci (seasonal-flu)	1m 6s
test-pathogen-repo-ci (zika)	1m 1s
build-docs / build-pip	1m 35s
build-docs / build-conda	0s
codecov	16s
	3h 3m 53s

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