Support Python 3.12 and test in CI #3025

Job	Run time
test (python=3.8 biopython=1.82)	12m 23s
test (python=3.8 biopython=latest)	12m 4s
mypy	51s
test (python=3.9 biopython=1.82)	12m 56s
check-docs	43s
test (python=3.9 biopython=latest)	12m 36s
pathogen-repo-ci (dengue)	2m 39s
test (python=3.10 biopython=1.82)	12m 33s
pathogen-repo-ci (lassa)	42s
test (python=3.10 biopython=latest)	12m 57s
pathogen-repo-ci-v0 (avian-flu)	53s
test (python=3.11 biopython=1.82)	12m 28s
pathogen-repo-ci (measles)	1m 19s
pyright	22s
pathogen-repo-ci-v0 (ebola)	58s
test (python=3.11 biopython=latest)	12m 45s
pathogen-repo-ci (mpox)	1m 12s
pathogen-repo-ci-v0 (mumps)	55s
test (python=3.12 biopython=1.82)	19m 48s
pathogen-repo-ci-v0 (ncov)	58s
pathogen-repo-ci (seasonal-cov)	2m 1s
test (python=3.12 biopython=latest)	19m 30s
pathogen-repo-ci-v0 (rsv)	8m 33s
pathogen-repo-ci (zika)	1m 13s
pathogen-repo-ci-v0 (seasonal-flu)	1m 10s
pathogen-repo-ci-v0 (tb)	1m 15s
build-docs / build	2m 34s
codecov	15s
release	0s
rebuild-docker-image	0s
	2h 48m 33s

Provide feedback