Support pandas v2 #3003

Job	Run time
test (python=3.8 biopython=1.80)	5m 42s
mypy	48s
check-docs	36s
pathogen-repo-ci (dengue)	2m 40s
test (python=3.8 biopython=latest)	5m 56s
pathogen-repo-ci (lassa)	42s
pathogen-repo-ci-v0 (avian-flu)	51s
pathogen-repo-ci (measles)	1m 21s
pyright	28s
test (python=3.9 biopython=1.80)	6m 12s
pathogen-repo-ci-v0 (ebola)	1m 2s
pathogen-repo-ci (mpox)	1m 16s
test (python=3.9 biopython=latest)	6m 25s
pathogen-repo-ci-v0 (mumps)	54s
pathogen-repo-ci (seasonal-cov)	1m 46s
test (python=3.10 biopython=1.80)	6m 21s
pathogen-repo-ci-v0 (ncov)	1m 0s
pathogen-repo-ci (zika)	56s
test (python=3.10 biopython=latest)	6m 19s
pathogen-repo-ci-v0 (rsv)	8m 29s
test (python=3.11 biopython=1.80)	6m 9s
pathogen-repo-ci-v0 (seasonal-flu)	1m 11s
test (python=3.11 biopython=latest)	6m 14s
pathogen-repo-ci-v0 (tb)	1m 20s
build-docs / build	1m 58s
codecov	18s
release	0s
rebuild-docker-image	0s
	1h 16m 54s

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