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Update README.md with link to ECDC account #39
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on: | |
push: | |
branches: | |
- master | |
- migrant | |
name: Deploy to ShinyApps | |
jobs: | |
Deploy: | |
runs-on: ubuntu-22.04 | |
name: Deploy to ShinyApps | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- name: Check out the repository | |
uses: actions/checkout@v3 | |
- name: Set up Node 19.9.0 | |
uses: actions/setup-node@v3 | |
with: | |
node-version: '19.9.0' | |
architecture: 'x64' | |
cache: 'yarn' | |
cache-dependency-path: 'Client/yarn.lock' | |
- name: Build UI | |
run: | | |
npm install -g yarn | |
yarn set version latest | |
yarn install | |
yarn build | |
working-directory: Client | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: '4.2.3' | |
use-public-rspm: true | |
- uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
dependencies: '"hard"' | |
pak-version: devel | |
extra-packages: | | |
any::rsconnect | |
any::pkgbuild | |
any::rcmdcheck | |
working-directory: Server | |
- name: Install hivPlatform R package | |
run: | | |
pak::pkg_install('github::nextpagesoft/hivEstimatesAccuracy2/Server@migrant') | |
shell: Rscript {0} | |
working-directory: Server | |
- name: Deploy | |
env: | |
SHINYAPPS_ACCOUNT: ${{ secrets.SHINYAPPS_ACCOUNT }} | |
SHINYAPPS_TOKEN: ${{ secrets.SHINYAPPS_TOKEN }} | |
SHINYAPPS_SECRET: ${{ secrets.SHINYAPPS_SECRET }} | |
SHINYAPPS_APP_NAME: hivPlatform-${{ env.GITHUB_REF_NAME }} | |
run: > | |
rsconnect::setAccountInfo( | |
name = Sys.getenv('SHINYAPPS_ACCOUNT'), | |
token = Sys.getenv('SHINYAPPS_TOKEN'), | |
secret = Sys.getenv('SHINYAPPS_SECRET') | |
); | |
rsconnect::deployApp( | |
account = Sys.getenv('SHINYAPPS_ACCOUNT'), | |
appName = 'hivPlatform-migrant', | |
appFiles = 'app.R', | |
contentCategory = 'application', | |
forceUpdate = TRUE | |
) | |
shell: Rscript {0} | |
working-directory: Server |