nf-quilt support for NextFlow 23.04 #8
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Hi, to simplify the testing of plugins in the latest nextflow release (23.04.1), the ability to specify the plugin manifest metadata has been added using the env variable. For example |
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Sweet! Confirmed it works: $ nextflow run ../nf-quilt/main.nf
N E X T F L O W ~ version 23.04.0
Launching `../nf-quilt/main.nf` [irreverent_lichterman] DSL2 - revision: 08f61c1c67
Downloading plugin [email protected]
Failed requirement - Plugin [email protected] requires Nextflow version <22.11.0-edge (current 23.04.0)
$ export NXF_PLUGINS_TEST_REPOSITORY=https://github.com/quiltdata/nf-quilt/releases/download/0.3.5/nf-quilt-0.3.5-meta.json
$ nextflow run ../nf-quilt/main.nf -plugins [email protected]
N E X T F L O W ~ version 23.04.0
WARN: =======================================================================
= WARNING =
= You are running this script using a un-official plugin repository. =
= =
= https://github.com/quiltdata/nf-quilt/releases/download/0.3.5/nf-quilt-0.3.5-meta.json
= =
= This is only meant to be used for plugin repos purposes. =
=============================================================================
Launching `../nf-quilt/main.nf` [intergalactic_coulomb] DSL2 - revision: 08f61c1c67
Downloading plugin [email protected]
... |
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Is there someplace I can set |
Excellent
You can add in the pre-run script |
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ps. probably better to not use git rebase for these PRs |
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Turns out I did not properly update my manifest.
This also adds support for customizing the Quilt Package
and preliminary Benchling integration