MNT: migrate requirement files to PEP 735 dependency groups

.github/workflows/cd.yml

@@ -14,14 +14,9 @@ jobs:
     steps:
     - name: Checkout Source
       uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
-    - name: Setup Python
-      uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
-      with:
-        python-version: 3.x
-    - name: Install build dependencies
-      run: python -m pip install build wheel
+    - uses: astral-sh/setup-uv@3b9817b1bf26186f03ab8277bab9b827ea5cc254 # v3.2.0
     - name: Build distributions
       shell: bash -l {0}
-      run: python -m build
+      run: uv build
     - name: Publish package distributions to PyPI
       uses: pypa/gh-action-pypi-publish@f7600683efdcb7656dec5b29656edb7bc586e597 # v1.10.3

.github/workflows/ci.yml

@@ -36,11 +36,7 @@ jobs:
     runs-on: ${{ matrix.os }}
     steps:
     - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
-    - name: Setup Python
-      uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
-      with:
-        python-version: ${{ matrix.python-version }}
-
+    - uses: astral-sh/setup-uv@3b9817b1bf26186f03ab8277bab9b827ea5cc254 # v3.2.0
     - uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
       if: ${{ !matrix.free-threading }}
       with:
@@ -50,46 +46,32 @@ jobs:
       with:
         python-version: ${{ matrix.python-version }}
         nogil: true
-    - name: Setup package
+    - name: Build
       run: |
-        python -m pip install --upgrade pip
-        python -m pip install "."
-        python -m pip install -r requirements/tests.txt
+        uv venv --python-preference=only-system -p ${{ matrix.python-version }}
+        uv sync --group test --no-editable
     - name: Run tests
-      run: |
-        pytest --color=yes
-
-  tests_isolated_app:
-    name: Python ${{ matrix.python-version }} (isolated deps)
-    strategy:
-      matrix:
-        python-version:
-        - '3.10'
-        - '3.13'
+      run: uv run pytest --color=yes
 
+  tests_minimal_env:
+    name: Test minimal requirements
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
-    - name: Setup Python
-      uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
-      with:
-        python-version: ${{ matrix.python-version }}
-    - name: Setup package
+    - uses: astral-sh/setup-uv@3b9817b1bf26186f03ab8277bab9b827ea5cc254 # v3.2.0
+    - name: Build
       run: |
-        python -m pip install --upgrade pip
-        python -m pip install ".[isolated]"
-        python -m pip install -r requirements/tests.txt
+        uv sync -p 3.10 \
+          --resolution=lowest-direct --group test --no-editable
     - name: Run tests
-      run: |
-        pytest --color=yes
+      run: uv run pytest --color=yes
 
   type-check:
-
     strategy:
       matrix:
         python-version:
         - '3.10'
-        - '3.12'
+        - '3.13'
 
     runs-on: ubuntu-latest
     name: type check
@@ -100,20 +82,11 @@ jobs:
 
     steps:
     - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
-    - name: Setup Python
-      uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
-      with:
-        python-version: ${{ matrix.python-version }}
-
+    - uses: astral-sh/setup-uv@3b9817b1bf26186f03ab8277bab9b827ea5cc254 # v3.2.0
     - name: Build
-      run: |
-        python -m pip install --upgrade pip
-        python -m pip install "."
-        python -m pip install -r requirements/typecheck.txt
-
+      run: uv sync -p ${{ matrix.python-version }} --group typecheck --no-editable
     - name: Run mypy
-      run: mypy src/idefix_cli
-
+      run: uv run mypy src/idefix_cli
 
   docs:
     runs-on: ubuntu-latest
@@ -125,17 +98,14 @@ jobs:
 
     steps:
     - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
-    - name: Setup Python
-      uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
-      with:
-        python-version: 3.x
+    - uses: astral-sh/setup-uv@3b9817b1bf26186f03ab8277bab9b827ea5cc254 # v3.2.0
     - name: Setup env
       run: |
-        python -m pip install --upgrade pip
-        python -m pip install -r requirements/docs.txt
+        uv venv
+        uv pip install -r docs/requirements.txt
     - name: Build
       run: |
-        python -m mkdocs build
+        uv run mkdocs build
     - name: Upload artifacts
       uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 # v4.4.3
       with:

.readthedocs.yaml

@@ -17,4 +17,4 @@ mkdocs:
 # Optionally declare the Python requirements required to build your docs
 python:
   install:
-  - requirements: requirements/docs.txt
+  - requirements: requirements.txt

requirements/docs.in → docs/requirements.in

@@ -1,5 +1,5 @@
 # update concrete env with
-# uv pip compile requirements/docs.in > requirements/docs.txt
+# uv pip compile requirements.in > requirements.txt
 
 .
 mkdocs>=1.5.3

pyproject.toml

@@ -36,6 +36,16 @@ baballe = "idefix_cli.__main__:alt_main"
 [project.urls]
 Homepage = "https://github.com/neutrinoceros/idefix_cli"
 
+
+[dependency-groups]
+test = [
+    "pytest-check>=2.1.2",
+    "pytest>=7.2.1",
+]
+typecheck = [
+    "mypy>=1.11.2",
+]
+
 [tool.setuptools]
 license-files = [
     "LICENSE",
@@ -78,7 +88,7 @@ show_error_context = true
 
 [tool.pytest.ini_options]
 minversion = "6.0"
-addopts = "--doctest-modules"
+addopts = "-ra --doctest-modules"
 filterwarnings = [
     "error",
 ]