Fix formatting

neuronsimulator · May 29, 2024 · 4221238 · 4221238
1 parent 6a5a51f
commit 4221238
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Showing 2 changed files with 18 additions and 6 deletions.
diff --git a/share/lib/python/neuron/rxd/region.py b/share/lib/python/neuron/rxd/region.py
@@ -934,7 +934,7 @@ def nrn_region(self, value):
                 self._nrn_region = value
             if value == "i" and self.geometry._surface_fraction == 0:
                 warnings.warn(
-                    f"{self.name} is in the \"i\" region with a surface_fraction of 0 and will not have currents added"
+                    f'{self.name} is in the "i" region with a surface_fraction of 0 and will not have currents added'
                 )
         else:
             raise RxDException("Cannot set nrn_region now; model already instantiated")

diff --git a/test/rxd/test_region_sections.py b/test/rxd/test_region_sections.py
@@ -35,9 +35,15 @@ def test_zero_fractional_volume_3d(neuron_instance):
     dend1 = h.Section("dend1")
     dend1.nseg = 5
     import warnings
+
     with warnings.catch_warnings(record=True) as w:
-        cyt = rxd.Region(dend1.wholetree(), "i", name="cyt",
-                         geometry=rxd.FractionalVolume(volume_fraction=0.8), dx=0.25)
+        cyt = rxd.Region(
+            dend1.wholetree(),
+            "i",
+            name="cyt",
+            geometry=rxd.FractionalVolume(volume_fraction=0.8),
+            dx=0.25,
+        )
         ca = rxd.Species(cyt, name="ca", charge=2, initial=1e-12)
         dend1.L = 10
         dend1.diam = 2
@@ -51,12 +57,18 @@ def test_zero_fractional_volume_1d(neuron_instance):
     dend1 = h.Section("dend1")
     dend1.nseg = 5
     import warnings
+
     with warnings.catch_warnings(record=True) as w:
-        cyt = rxd.Region(dend1.wholetree(), "i", name="cyt",
-                         geometry=rxd.FractionalVolume(volume_fraction=0.8), dx=0.25)
+        cyt = rxd.Region(
+            dend1.wholetree(),
+            "i",
+            name="cyt",
+            geometry=rxd.FractionalVolume(volume_fraction=0.8),
+            dx=0.25,
+        )
         ca = rxd.Species(cyt, name="ca", charge=2, initial=1e-12)
         dend1.L = 10
         dend1.diam = 2
         rxd.set_solve_type(domain=[dend1], dimension=1)
         h.finitialize()
-        assert len(w) == 1
+        assert len(w) == 1