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Merge changes for JOSS review into main #102

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merged 59 commits into from
Jul 19, 2024
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dd55c38
Added pooch and tqdm as dependencies
rmndrs89 Jun 26, 2024
812dfe5
Initial rewrite of datasets submodule
rmndrs89 Jun 26, 2024
6529ed8
Updated load_recording for the Mobilise-D dataset
rmndrs89 Jun 27, 2024
4ba353f
Updated the docs for the example Mobilise-D data
rmndrs89 Jun 27, 2024
ba1258d
Updated the basic tutorial
rmndrs89 Jun 28, 2024
d51d7c1
Updated basic example and loading data example
rmndrs89 Jul 4, 2024
b8c5791
Updated gait sequence detection example
rmndrs89 Jul 4, 2024
46b9fee
Updated gait sequence and initial contact detection example notebooks
rmndrs89 Jul 4, 2024
1c1f9c6
Removed tqdm as dependency
rmndrs89 Jul 5, 2024
9179115
[ADD] fetch data from OpenNeuro
JuliusWelzel Jul 15, 2024
adc9258
Declaration of Helsinki
masoudabedinifar Jul 17, 2024
8f60c7b
data used for each module
masoudabedinifar Jul 17, 2024
75636bf
Contributing
masoudabedinifar Jul 17, 2024
a62e731
summary revision
masoudabedinifar Jul 17, 2024
66176ff
Statement of need revision
masoudabedinifar Jul 17, 2024
d8f471f
State of the Field revision & remove unsued files
masoudabedinifar Jul 17, 2024
32d62a3
name changed to KMAT
masoudabedinifar Jul 17, 2024
2a11cda
name changed to Kiel Motion Analysis Toolbox (KMAT)
masoudabedinifar Jul 17, 2024
b151fe5
name changed to KMAT
masoudabedinifar Jul 17, 2024
90604e8
name changed to kamt
masoudabedinifar Jul 17, 2024
ca7785d
name chanegd to kmat
masoudabedinifar Jul 17, 2024
e66f4cc
Revert "name chanegd to kmat"
masoudabedinifar Jul 17, 2024
6cb2567
Revert "name changed to kamt"
masoudabedinifar Jul 17, 2024
e4a406c
Revert "name changed to KMAT"
masoudabedinifar Jul 17, 2024
b6ab3ae
Revert "name changed to Kiel Motion Analysis Toolbox (KMAT)"
masoudabedinifar Jul 17, 2024
97a79fd
Revert "name changed to KMAT"
masoudabedinifar Jul 17, 2024
0fd4bc5
renaming to Kiel Motion Analysis Toolbox
masoudabedinifar Jul 17, 2024
a01523a
renamed to kielmat
masoudabedinifar Jul 17, 2024
4e793bb
renamed to KielMotionAnalysisToolbox
masoudabedinifar Jul 17, 2024
0586e6b
[FIX] example with load KeepControl data from OpenNeuro
JuliusWelzel Jul 18, 2024
a319895
update gitignore for example datasets
JuliusWelzel Jul 18, 2024
a980386
Merge branch 'fetch-keepControl-data' into development-main
JuliusWelzel Jul 18, 2024
12ca069
[FIX] run examples with online avaliable datasets
JuliusWelzel Jul 18, 2024
4b6d054
[ADD] new logo
JuliusWelzel Jul 19, 2024
092e19d
[ADD] new logo to docs
JuliusWelzel Jul 19, 2024
6d95021
Merge branch 'development-main' of https://github.com/neurogeriatrics…
JuliusWelzel Jul 19, 2024
7c24e70
Merge pull request #97 from neurogeriatricskiel/rename_toolbox
JuliusWelzel Jul 19, 2024
bcf1cfe
Merge pull request #98 from neurogeriatricskiel/development-main
JuliusWelzel Jul 19, 2024
f555e4c
[FIX] keepkontrol fetching data from OpenNeuro
JuliusWelzel Jul 19, 2024
02e5099
Merge pull request #99 from neurogeriatricskiel/fetch-keepControl-data
JuliusWelzel Jul 19, 2024
e8ed594
Merge pull request #100 from neurogeriatricskiel/main
JuliusWelzel Jul 19, 2024
06b20b8
Apply Black Formatting
invalid-email-address Jul 19, 2024
ffecfcc
Changed `ngmt` to `kielmat` and `NGMTRecording` to `KielMATRecording`
rmndrs89 Jul 19, 2024
856fb9d
Merge branch 'development-main' of https://github.com/neurogeriatrics…
JuliusWelzel Jul 19, 2024
5cb91f4
Merge pull request #101 from neurogeriatricskiel/fetch-mobilised-data
JuliusWelzel Jul 19, 2024
12ebb6b
[FIX] refactor with kielmat
JuliusWelzel Jul 19, 2024
20cff73
Initial test for loading recordings for updated Keep Control and Mobi…
rmndrs89 Jul 19, 2024
bfad904
Apply Black Formatting
invalid-email-address Jul 19, 2024
3bec460
Added `black` as dependency to group dev (and reformatted `test_datas…
rmndrs89 Jul 19, 2024
2c64900
Merge branch 'development-main' of https://github.com/neurogeriatrics…
rmndrs89 Jul 19, 2024
632d52b
[FIX] examples work with publically avaliable datasets
JuliusWelzel Jul 19, 2024
6f34377
fix spelling
JuliusWelzel Jul 19, 2024
2a6cab8
[ENH] use logging in favour of printing
JuliusWelzel Jul 19, 2024
adb009e
Apply Black Formatting
invalid-email-address Jul 19, 2024
2e66e23
include small example data for basic load example, remove all other d…
JuliusWelzel Jul 19, 2024
625686c
Merge branch 'development-main' of https://github.com/neurogeriatrics…
JuliusWelzel Jul 19, 2024
5f50fcc
[FIX] examples with current .md files in docs
JuliusWelzel Jul 19, 2024
63d1d55
[ADD] test for HDF5Decoder
JuliusWelzel Jul 19, 2024
f5cbf94
Apply Black Formatting
invalid-email-address Jul 19, 2024
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Updated gait sequence and initial contact detection example notebooks
rmndrs89 committed Jul 4, 2024
commit 46b9feeb5f01b7f0eb20149129838eaf2983d9a0
3 changes: 0 additions & 3 deletions examples/modules_01_gsd.ipynb
Original file line number Diff line number Diff line change
@@ -55,9 +55,6 @@
"source": [
"import numpy as np\n",
"import matplotlib.pyplot as plt\n",
"import os\n",
"from pathlib import Path\n",
"\n",
"from ngmt.datasets import mobilised\n",
"from ngmt.modules.gsd import ParaschivIonescuGaitSequenceDetection\n",
"from ngmt.config import cfg_colors"
202 changes: 141 additions & 61 deletions examples/modules_02_icd.ipynb

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