Small fixes #383
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name: Tests | |
on: pull_request | |
env: | |
MODULE_NAME: connectome | |
jobs: | |
test: | |
runs-on: ubuntu-20.04 | |
strategy: | |
matrix: | |
python-version: [ '3.7', '3.8', '3.9', '3.10', '3.11' ] | |
services: | |
redis: | |
image: redis | |
ports: | |
- 6379:6379 | |
options: --entrypoint redis-server | |
openssh-server: | |
image: linuxserver/openssh-server | |
ports: | |
- 2222:2222 | |
env: | |
PUID: 1001 | |
PGID: 1001 | |
PASSWORD_ACCESS: 'true' | |
USER_NAME: remote_user | |
USER_PASSWORD: password | |
volumes: | |
- /tmp:/tmp | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Check the version | |
if: "! github.event.pull_request.head.repo.fork " | |
run: | | |
VERSION=$(python -c "from pathlib import Path; import runpy; folder, = {d.parent for d in Path().resolve().glob('*/__init__.py') if d.parent.is_dir() and (d.parent / '__version__.py').exists()}; print(runpy.run_path(folder / '__version__.py')['__version__'])") | |
MATCH=$(pip index versions $MODULE_NAME | grep "Available versions:" | grep $VERSION) || echo | |
echo $MATCH | |
if [ "$GITHUB_BASE_REF" = "master" ] && [ "$MATCH" != "" ]; then exit 1; fi | |
- name: Build the package | |
run: | | |
python setup.py sdist | |
- name: Create ssh key | |
run: | | |
mkdir ~/.ssh && chmod 770 ~/.ssh | |
cp tests/assets/ssh_config ~/.ssh/config | |
# make sure we can connect now | |
sshpass -p password ssh -o "StrictHostKeyChecking no" remote echo Ok | |
- name: Install | |
run: | | |
pip install dist/* | |
pip install -r tests/requirements.txt | |
cd tests | |
export MODULE_PARENT=$(python -c "import $MODULE_NAME, os; print(os.path.dirname($MODULE_NAME.__path__[0]))") | |
export MODULE_PARENT=${MODULE_PARENT%"/"} | |
cd .. | |
echo $MODULE_PARENT | |
echo "MODULE_PARENT=$(echo $MODULE_PARENT)" >> $GITHUB_ENV | |
- name: Test with pytest | |
run: | | |
pytest tests --junitxml=reports/junit-${{ matrix.python-version }}.xml --cov="$MODULE_PARENT/$MODULE_NAME" --cov-report=xml --cov-branch | |
- name: Generate coverage report | |
run: | | |
coverage xml -o reports/coverage-${{ matrix.python-version }}.xml | |
sed -i -e "s|$MODULE_PARENT/||g" reports/coverage-${{ matrix.python-version }}.xml | |
sed -i -e "s|$(echo $MODULE_PARENT/ | tr "/" .)||g" reports/coverage-${{ matrix.python-version }}.xml | |
- name: Upload artifacts | |
uses: actions/upload-artifact@v3 | |
with: | |
name: reports-${{ matrix.python-version }} | |
path: reports/*-${{ matrix.python-version }}.xml | |
if: ${{ always() }} | |
- name: Upload coverage results | |
uses: codecov/codecov-action@v3 | |
with: | |
fail_ci_if_error: true | |
files: reports/coverage-${{ matrix.python-version }}.xml | |
verbose: true |