Small fixes #383
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| name: Tests | |
| on: pull_request | |
| env: | |
| MODULE_NAME: connectome | |
| jobs: | |
| test: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| matrix: | |
| python-version: [ '3.7', '3.8', '3.9', '3.10', '3.11' ] | |
| services: | |
| redis: | |
| image: redis | |
| ports: | |
| - 6379:6379 | |
| options: --entrypoint redis-server | |
| openssh-server: | |
| image: linuxserver/openssh-server | |
| ports: | |
| - 2222:2222 | |
| env: | |
| PUID: 1001 | |
| PGID: 1001 | |
| PASSWORD_ACCESS: 'true' | |
| USER_NAME: remote_user | |
| USER_PASSWORD: password | |
| volumes: | |
| - /tmp:/tmp | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Check the version | |
| if: "! github.event.pull_request.head.repo.fork " | |
| run: | | |
| VERSION=$(python -c "from pathlib import Path; import runpy; folder, = {d.parent for d in Path().resolve().glob('*/__init__.py') if d.parent.is_dir() and (d.parent / '__version__.py').exists()}; print(runpy.run_path(folder / '__version__.py')['__version__'])") | |
| MATCH=$(pip index versions $MODULE_NAME | grep "Available versions:" | grep $VERSION) || echo | |
| echo $MATCH | |
| if [ "$GITHUB_BASE_REF" = "master" ] && [ "$MATCH" != "" ]; then exit 1; fi | |
| - name: Build the package | |
| run: | | |
| python setup.py sdist | |
| - name: Create ssh key | |
| run: | | |
| mkdir ~/.ssh && chmod 770 ~/.ssh | |
| cp tests/assets/ssh_config ~/.ssh/config | |
| # make sure we can connect now | |
| sshpass -p password ssh -o "StrictHostKeyChecking no" remote echo Ok | |
| - name: Install | |
| run: | | |
| pip install dist/* | |
| pip install -r tests/requirements.txt | |
| cd tests | |
| export MODULE_PARENT=$(python -c "import $MODULE_NAME, os; print(os.path.dirname($MODULE_NAME.__path__[0]))") | |
| export MODULE_PARENT=${MODULE_PARENT%"/"} | |
| cd .. | |
| echo $MODULE_PARENT | |
| echo "MODULE_PARENT=$(echo $MODULE_PARENT)" >> $GITHUB_ENV | |
| - name: Test with pytest | |
| run: | | |
| pytest tests --junitxml=reports/junit-${{ matrix.python-version }}.xml --cov="$MODULE_PARENT/$MODULE_NAME" --cov-report=xml --cov-branch | |
| - name: Generate coverage report | |
| run: | | |
| coverage xml -o reports/coverage-${{ matrix.python-version }}.xml | |
| sed -i -e "s|$MODULE_PARENT/||g" reports/coverage-${{ matrix.python-version }}.xml | |
| sed -i -e "s|$(echo $MODULE_PARENT/ | tr "/" .)||g" reports/coverage-${{ matrix.python-version }}.xml | |
| - name: Upload artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: reports-${{ matrix.python-version }} | |
| path: reports/*-${{ matrix.python-version }}.xml | |
| if: ${{ always() }} | |
| - name: Upload coverage results | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| fail_ci_if_error: true | |
| files: reports/coverage-${{ matrix.python-version }}.xml | |
| verbose: true |