bump more debs (#543)

.github/workflows/ci.yaml

@@ -38,16 +38,13 @@ jobs:
       - name: Install python
         uses: actions/setup-python@v4
         with:
-          python-version: "3.7"
+          python-version: "3.9"
 
       - name: Install dependencies
         run: |
           python -m venv venv
           source venv/bin/activate
           pip install -U neuro-cli
-          # This is TMP work-around due to https://github.com/neuro-inc/neuro-cli/pull/2671
-          pip uninstall -y click
-          pip install --no-cache-dir click==8.1.2
 
       - name: Configure environment
         run: |

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: 'v4.3.0'
+  rev: 'v4.4.0'
   hooks:
   - id: check-merge-conflict
     exclude: "rst$"
@@ -18,7 +18,7 @@ repos:
     - id: black
       language_version: python3 # Should be a command that runs python3.6+
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: 'v4.3.0'
+  rev: 'v4.4.0'
   hooks:
   - id: check-case-conflict
   - id: check-json
@@ -32,7 +32,7 @@ repos:
   - id: debug-statements
 # Another entry is required to apply file-contents-sorter to another file
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: 'v4.3.0'
+  rev: 'v4.4.0'
   hooks:
   - id: file-contents-sorter
     files: |
@@ -43,6 +43,6 @@ repos:
   - id: pyupgrade
     args: ['--py36-plus']
 - repo: https://github.com/PyCQA/flake8
-  rev: '5.0.4'
+  rev: '6.0.0'
   hooks:
   - id: flake8

Dockerfile

@@ -40,10 +40,6 @@ RUN APT_INSTALL="apt-get install -y --no-install-recommends" && \
         cd ../.. && rm -r nvtop && \
         # <<
         ln -s $(which python3) /usr/bin/python && \
-        # To pass test `jupyter lab build` (jupyterlab extensions), it needs nodejs>=12
-        # See instructions https://github.com/nodesource/distributions/blob/master/README.md#installation-instructions
-        # curl -fsSL https://deb.nodesource.com/setup_lts.x | -E bash - &&\
-        # $APT_INSTALL nodejs && \
         # Git-LFS >>
         curl -s https://packagecloud.io/install/repositories/github/git-lfs/script.deb.sh | bash && \
         DEBIAN_FRONTEND=noninteractive $APT_INSTALL git-lfs && \

requirements/python.txt

@@ -5,8 +5,8 @@ jupyterlab==3.5.0
 matplotlib==3.6.2
 mlflow[extras]==2.0.1
 opencv-python-headless==4.6.0.66
-pandas==1.5.1
-Pillow==9.2.0
+pandas==1.5.2
+Pillow==9.3.0
 scikit-learn==1.1.2
 scipy==1.9.3
 tensorboardX==2.5.1