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chore: updated build docs
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mmolari committed Oct 12, 2022
1 parent 200a553 commit b67a49b
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1 change: 1 addition & 0 deletions docs/src/cli/build.md
Original file line number Diff line number Diff line change
Expand Up @@ -15,6 +15,7 @@ Build a multiple sequence alignment pangraph.
| enforce uppercase | Boolean | u | upper-case | toggle to force genomes to uppercase characters |
| distance calculator | String | d | distance-backend | only accepts "native" or "mash" |
| alignment kernel | String | k | alignment-kernel | only accepts "minimap2" or "mmseqs" |
| alignment kernel | Integer | K | kmer-length | kmer length, only used for mmseqs2 alignment kernel. If not specified will use mmseqs default. |

## Arguments
Expects one or more fasta files.
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4 changes: 2 additions & 2 deletions src/build.jl
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Expand Up @@ -73,8 +73,8 @@ Build = Command(
Arg(
Int,
"k-mer length",
(short="-K", long="--kmer-len"),
"kmer length, only used for mmseqs2 alignment kernel. If not specified will use the default for mmseqs.",
(short="-K", long="--kmer-length"),
"kmer length, only used for mmseqs2 alignment kernel. If not specified will use mmseqs default.",
0,
)
],
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