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Third‐party tools
The Docker image contains third-party tools distributed under the licensing terms of the respective license holders.
GeneMarkS-2+ is distributed as part of PGAP with limited rights of use and redistribution from the Georgia Tech Research Corporation. See the full text of the license.
GNU General Public License v3.0
Permissions of this strong copyleft license are conditioned on making available complete source code of licensed works and modifications, which include larger works using a licensed work, under the same license. Copyright and license notices must be preserved. Contributors provide an express grant of patent rights. See the full text of the license.
The original TIGRFAMs database was a research project of the J. Craig Venter Institute (JCVI) . TIGRFAMs, short for The Institute for Genomic Research's database of protein families, is a collection of manually curated protein families focusing primarily on prokaryotic sequences. It consists of hidden Markov models (HMMs), multiple sequence alignments, Gene Ontology (GO) terminology, Enzyme Commission (EC) numbers, gene symbols, protein family names, descriptive text, cross-references to related models in TIGRFAMs and other databases, and pointers to the literature. The work has been described in the articles listed in the References section above and use of the TIGRFAMs database must grant proper attribution by citing those four articles.
As of April 2018, rights were transferred to the National Center for Biotechnology Information (NCBI), National Library of Medicine, NIH, for the data to be made available for distribution under a Creative Commons Attribution-ShareAlike 4.0 license. Please see (https://creativecommons.org/licenses/by-sa/4.0/) for a brief summary of the license and (https://creativecommons.org/licenses/by-sa/4.0/legalcode) to see the full text.