-
Notifications
You must be signed in to change notification settings - Fork 88
References
NCBI prokaryotic genome annotation pipeline.
Tatusova T, DiCuccio M, Badretdin A, Chetvernin V, Nawrocki EP, Zaslavsky L, Lomsadze A, Pruitt KD, Borodovsky M, Ostell J.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. Epub 2016 Jun 24.
RefSeq: an update on prokaryotic genome annotation and curation.
Haft DH, DiCuccio M, Badretdin A, Brover V, Chetvernin V, O'Neill K, Li W, Chitsaz F, Derbyshire MK, Gonzales NR, Gwadz M, Lu F, Marchler GH, Song JS, Thanki N, Yamashita RA, Zheng C, Thibaud-Nissen F, Geer LY, Marchler-Bauer A, Pruitt KD.
Nucleic Acids Res. 2018 Jan 4;46(D1):D851-D860.
Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes
Lomsadze A, Gemayel K, Tang S, Borodovsky M.
Genome Research. 2018; 28(7):1079-1089.
TIGRFAMs: a protein family resource for the functional identification of proteins.
Haft DH, Loftus BJ, Richardson DL, Yang F, Eisen JA, Paulsen IT, White O.
Nucleic Acids Res. 2001 Jan 1;29(1):41-3.
The TIGRFAMs database of protein families.
Haft DH, Selengut JD, White O.
Nucleic Acids Res. 2003 Jan 1;31(1):371-3.
TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes.
Selengut JD, Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, Richter AR, White O.
Nucleic Acids Res. 2007 Jan;35(Database issue):D260-4. Epub 2006 Dec 6.
TIGRFAMs and Genome Properties in 2013.
Haft DH, Selengut JD, Richter RA, Harkins D, Basu MK, Beck E.
Nucleic Acids Res. 2013 Jan;41(Database issue):D387-95. doi: 10.1093/nar/gks1234. Epub 2012 Nov 28.