Merge pull request #69 from clbarnes/smat2

NBLAST score matrix builder v2
navis-org · Apr 12, 2022 · 7437726 · 7437726
2 parents c4be4eb + dfc6b4b
commit 7437726
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diff --git a/.gitignore b/.gitignore
@@ -130,3 +130,5 @@ ENV/
 #*.swc
 #*.json
 MANIFEST
+
+tmp/
diff --git a/docs/source/api.rst b/docs/source/api.rst
@@ -364,6 +364,15 @@ Functions to compare morphology.
     navis.synblast
     navis.persistence_distances
 
+Utilities for creating your own score matrices for NBLAST can be found in
+
+.. autosummary::
+    :toctree: generated/
+
+    navis.nbl.smat.Lookup2d
+    navis.nbl.smat.Digitizer
+    navis.nbl.smat.LookupDistDotBuilder
+
 Polarity metrics
 ----------------
 .. autosummary::

diff --git a/docs/source/gallery.rst b/docs/source/gallery.rst
@@ -72,6 +72,7 @@ function. There you will also find more examples.
    tutorials/nblast
    tutorials/nblast_flycircuit
    tutorials/nblast_hemibrain
+   tutorials/smat
 
 .. raw:: html
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@@ Expand Up / @@ -130,3 +130,5 @@ ENV/ @@
     #*.swc
     #*.json
     MANIFEST
+    tmp/