Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix/neuprint roi connectivity #88

Merged
merged 10 commits into from
Mar 2, 2020
Merged

Conversation

jefferis
Copy link
Contributor

Progress on #87. Will probably still change some of the default behaviour re cached/full.

* need to check that no connections are missing
* progress on #87
* switch to tibble (a bit quicker than standard data.frame
* don't keep on cbinding data.frames but just make one at the beginning
* first of all actually make it work
* some speed ups by switching from grep to stringr::str_detect
* use some data from neuprint_find_neurons
* this actually tests equal with tibble or data.frame
* and complain if you do full=T, cached=T since it's not possible
* they're a little slow but still probably <10s and a good idea to cover the whole function
@jefferis jefferis merged commit bcf5977 into master Mar 2, 2020
@jefferis jefferis deleted the fix/neuprint_ROI_connectivity branch March 7, 2020 17:58
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant