support annotating with alternative clio user #12

	# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
	# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
	on:
	push:
	branches: [main, master]
	pull_request:
	branches: [main, master]
	release:
	types: [published]
	workflow_dispatch:

	name: pkgdown

	jobs:
	pkgdown:
	runs-on: ubuntu-latest
	# Only restrict concurrency for non-PR jobs
	concurrency:
	group: pkgdown-${{ github.event_name != 'pull_request' \|\| github.run_id }}
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	R_KEEP_PKG_SOURCE: yes
	R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
	RETICULATE_MINICONDA_PYTHON_VERSION: 3.8
	RGL_USE_NULL: true
	_R_CHECK_DONTTEST_EXAMPLES_: FALSE
	_R_CHECK_CRAN_INCOMING_REMOTE_: false
	_R_CHECK_TESTS_NLINES_: 0
	_R_CHECK_FORCE_SUGGESTS_: false
	neuprint_token: ${{ secrets.NEUPRINT_TOKEN }}
	CLIO_TOKEN: ${{ secrets.CLIO_TOKEN }}
	MALEVNC_DATASET: VNC
	permissions:
	contents: write
	steps:
	- uses: actions/checkout@v3

	- uses: r-lib/actions/setup-pandoc@v2

	- uses: r-lib/actions/setup-r@v2
	with:
	use-public-rspm: true

	- uses: r-lib/actions/setup-r-dependencies@v2
	with:
	extra-packages: any::pkgdown, local::., catmaid=natverse/rcatmaid
	needs: website

	- name: Build site
	run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
	shell: Rscript {0}

	- name: Deploy to GitHub pages 🚀
	if: github.event_name != 'pull_request'
	uses: JamesIves/[email protected]
	with:
	clean: false
	branch: gh-pages
	folder: docs

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