Add clio new fields annotation check #325
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RETICULATE_MINICONDA_PYTHON_VERSION: 3.8 | |
| RGL_USE_NULL: true | |
| _R_CHECK_DONTTEST_EXAMPLES_: FALSE | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| _R_CHECK_TESTS_NLINES_: 0 | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| neuprint_token: ${{ secrets.NEUPRINT_TOKEN }} | |
| CLIO_TOKEN: ${{ secrets.CLIO_TOKEN }} | |
| MALEVNC_DATASET: VNC | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck, any::pkgdown, catmaid=natverse/rcatmaid | |
| needs: check | |
| - uses: r-lib/actions/check-r-package@v2 | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check | |
| - name: Upload check log results | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ matrix.config.tag }}-results | |
| path: ${{ github.event.repository.name }}.Rcheck/00check.log |