Merge pull request #20 from naobservatory/simon-drop-aav5

Simon drop aav5

pathogens/aav5.py

@@ -113,14 +113,10 @@ def estimate_prevalences() -> list[Prevalence]:
         date_source=Variable(date="2018"),
         location_source=Variable(country="Denmark"),
     )
-    return [
-        us_2020,
-        us_2021,
-        dk_2015,
-        dk_2016,
-        dk_2017,
-        dk_2018,
-    ]
+    return []
+    # Dropped, because of zero counts across all studies; lends little
+    # additonal information to the preprint (and complicates explantion
+    # of how we selected viruses.)
 
 
 def estimate_incidences() -> list[IncidenceRate]:

test.py

@@ -57,8 +57,7 @@ def test_properties_exist(self):
                 for estimate in pathogen.estimate_incidences():
                     self.assertIsInstance(estimate, IncidenceRate)
                     saw_estimate = True
-
-                if pathogen_name in ["aav6", "hbv", "hsv_2"]:
+                if pathogen_name in ["aav5", "aav6", "hbv", "hsv_2"]:
                     # It's expected that these pathogens have no estimates; see
                     # https://docs.google.com/document/d/1IIeOFKNqAwf9NTJeVFRSl_Q9asvu9_TGc_HSrlXg8PI/edit
                     self.assertFalse(saw_estimate)