Release 1.6

Change Log

1. Aromatic acids including phenylalanine, tyrosine, and tryptophan are now classified as "Shikimate and phenylpropanoids" and "Amino acids and peptides" in pathway level (previously they were just classified as "Amino acids and peptides", but those aromatic amino acids are synthesized from shikimate pathway)
2. Hyperparameters were tuned and optimized using Hyperband algorithm - https://zenodo.org/record/5068687/files/model.zip?download=1

Release 1.5

Change Log

1. New ontology
2. New model

RiPPs peptides class is subdivided to ;

RiPPs-Amatoxins and Phallotoxins
RiPPs-Bottromycins
RiPPs-Cyanobactins
RiPPs-Lanthipeptides
RiPPs-Lasso peptides
RiPPs-Linear azol(in)e-containing peptides
RiPPs-Microcins
RiPPs-Thiopeptides

Add peptaibols class
Add halogenated hydrocarbon class (volatile biogases)
Add cephalotaxus alkaloid class
Add homoerythrina alkaloids class

Release 1.4

What's New

New categories were updated on Sep.

Diphenyl ethers Class is added.
Natural diphenyl ether scaffolds are bio synthetically built from polyketide or shikimate pathways.
Now NPClassifier is able to classify the diphenyl ether natural products, and it also solves that some diphenyl ether compounds were classified as depsides or depsidones.
Reference link: https://pubs.acs.org/doi/10.1021/acs.orglett.9b00768

Acyclic triterpenoids and polyprenols were updated.

Glycoside checking algorithm is updated.
Previous version has issue about checking glycoside, especially with hydrofuran or hydropyran rings with one hydroxy group.
Now it is solved

Release 1.3

Whats New

1. Added Feedback
2. Updated ordering on table

Release 1.2

What's New

1. Updated Model

Release 1.1

What's New?

1. Updated model
2. Added new test case