Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
m-albert authored Oct 18, 2024
1 parent 45789c8 commit 6d74ea2
Showing 1 changed file with 2 additions and 4 deletions.
6 changes: 2 additions & 4 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -12,8 +12,8 @@
A napari plugin for stitching large multi-positioning datasets in 2/3D+t using [`multiview-stitcher`](https://github.com/multiview-stitcher/multiview-stitcher).

![](docs/images/napari-stitcher-loaded-mosaic-annotated.png)
<small>Image data by Arthur Michaut @ Jérôme Gros Lab @ Institut Pasteur.</small>

Quick guide:
1. Directly stitch napari layers: Use napari to load, visualize and [preposition](prearrangement.md) the tiles to be stitched.
2. When working with multi-channel data, stick to the following [naming convention](naming_convention.md): `{tile} :: {channel}`.
3. Load either all or just a subset of the layers into the plugin.
Expand All @@ -23,9 +23,7 @@ A napari plugin for stitching large multi-positioning datasets in 2/3D+t using [

## Demo

<video controls>
<source src="https://github.com/multiview-stitcher/napari-stitcher/raw/refs/heads/main/docs/images/demo_3d.mp4" type="video/mp4">
</video>
https://github.com/user-attachments/assets/8773e49f-af18-4ff3-ab2f-2a5f1b1cadf2

<small>This demo uses the awesome [`napari-threedee`](https://github.com/napari-threedee/napari-threedee) for prepositioning the tiles. Image data: [BigStitcher](https://imagej.net/plugins/bigstitcher/).</small>

Expand Down

0 comments on commit 6d74ea2

Please sign in to comment.