Docker container

Docker/Dockerfile

@@ -0,0 +1,27 @@
+# Environment build stage
+# Using miniconda image to build the required image
+FROM condaforge/mambaforge:latest AS build
+# Install conda-pack
+RUN mamba install conda-pack && mamba config --set remote_read_timeout_secs 600
+# Create the conda environment using environment.yml file
+COPY environment.yml .
+RUN mamba env create -f environment.yml
+# Package the environment as tar using conda-pack
+RUN conda-pack -n multiply -o /tmp/env.tar && \
+ mkdir /venv && cd /venv && tar -xf /tmp/env.tar && \
+ rm /tmp/env.tar
+# Unpack the environment in /venv using conda-unpack
+RUN /venv/bin/conda-unpack
+# Runtime stage
+# using slim debian image as the base image for the environment
+FROM debian:bullseye-slim AS runtime
+# Copy the environment directory /venv from the build stage:
+COPY --from=build /venv /venv
+COPY . /tmp/multiply
+
+EXPOSE 8888
+SHELL ["/bin/bash", "-c"]
+ENTRYPOINT source /venv/bin/activate && \
+           cd /tmp/multiply && \
+	   jupyter lab --no-browser --ip=0.0.0.0 --port=8888 \
+           --allow-root --NotebookApp.token=''

environment.yml

@@ -1,26 +1,23 @@
-name: mcmc_env
+name: multiply 
 channels:
     - conda-forge
 dependencies:
     - python<=3.10
     - numpy
     - scipy
-    - jupyter
-    - matplotlib
-    - seaborn
+    - jupyterlab
+    - matplotlib-base
+    - matplotlib-inline
     - ipywidgets
     - ipykernel
     - ipympl
     - ipywidgets
     - ipyleaflet
     - pandas
-    - gdal
     - tqdm
-    - libgdal
-    - netCDF4
+    - seaborn
     - pip
     - pip:
         - pcse
-        - git+https://github.com/jgomezdans/GomezEngine
-        - git+https://github.com/jgomezdans/gp_emulator
+        - https://github.com/jgomezdans/gp_emulator/archive/refs/tags/1.6.5.zip
         - prosail