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Dev #3

Merged
merged 80 commits into from
Apr 27, 2023
Merged

Dev #3

merged 80 commits into from
Apr 27, 2023

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jcasadogp
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PR after coding all the plot part and few changes in the previous parts (create yml file and populate database)

jcasadogp added 30 commits April 2, 2023 19:11
@jcasadogp
separate bash files
bd9e4f9
@jcasadogp
update on working notebooks - addExperiment
64b010a
@jcasadogp
populate db improves, where clause added
95270b2
@jcasadogp
updates on sql files
b080601
@jcasadogp
change parser name again
d50d4ef
@jcasadogp
change location of bash files
19b1ad4
@jcasadogp
separate reactor dictionary
5bc57e8
@jcasadogp
ch
7f109e0
@jcasadogp
ch
0907433
@jcasadogp
changes in bash scripts and functions
cb1879f
@jcasadogp
errors and warnings in the execute db function
58c57bb
@jcasadogp
get all records unified function
98fe7f9
@jcasadogp
changes in bash running
b9007dc
@jcasadogp
DB functions SQL files
3c1be03
@jcasadogp
changes in working notebooks
7c1502d
@jcasadogp
remove echo variables
1ce0bb3
@jcasadogp
add plotting parser
6e3c295
@jcasadogp
check no empty filtered dataframe goes to db
e6d4236
@jcasadogp
separate user input funcitons into new script
3aa697d
@jcasadogp
add plotting script and changes needed in other scripts for plot
586c1fa
@jcasadogp
intermediate files
32cad8c
@jcasadogp
changes in working notebooks, bacterial plots
f0b43a5
@jcasadogp
changes in the create db query, add unique fields in experiment table
fd5c50f
@jcasadogp
chnge plot options
2931b14
@jcasadogp
remove specific messages and add choose plot option
4c02700
@jcasadogp
add get records
7e9e6b7
@jcasadogp
change getWhereClause so it add IS NULL
44a8ff5
@jcasadogp
advances in plot with the legends
a10fced
@jcasadogp
working notebooks
7be3804
@jcasadogp
changes in count Records, add get where clause function there
29440fd
jcasadogp added 26 commits April 24, 2023 18:37
@jcasadogp
put regex constants on the constants file
f73fad3
@jcasadogp
add more constants
99a19b7
@jcasadogp
remove commands file
81ff2fa
@jcasadogp
create script
4902599
@jcasadogp
put db_field as directory
e1e6ee0
@jcasadogp
add posibility perturbation is 0
1ce24df
@jcasadogp
error if no parameters are passed to get results file
8258f94
@jcasadogp
add posibility perturbation is 0
e5272bd
@jcasadogp
change get records header and add get In Clause
6804840
@jcasadogp
final chnages, add zip file
7835d6c
@jcasadogp
back to commands
96e36ee
@jcasadogp
make experiment table smaller
353a34a
@jcasadogp
change error in plotting perturbation arguments
d115aec
@jcasadogp
change loops order so no error if id_args is empty
188ce13
@jcasadogp
change .md for .txt
52cb054
@jcasadogp
remove print args
31aefd4
@jcasadogp
add plate id, row and column to perturbations
3a4c7a2
@jcasadogp
remove plate columns in perturbation pretty table
e697f70
@jcasadogp
add zip file name and final documentation in the function headers
6136964
@jcasadogp
add zip file name function
eabf445
@jcasadogp
change lab analysis file name
733b27c
@jcasadogp
change subparsers order
9cde922
@jcasadogp
add functions documentation
2161f3b
@jcasadogp
add functions documentation
3ffc118
@jcasadogp
add functions documentation
94b9846
@jcasadogp
remove bash file with echos
bebf191
@jcasadogp jcasadogp merged commit bf7985f into main Apr 27, 2023
@jcasadogp jcasadogp deleted the dev branch April 27, 2023 10:04
@hariszaf hariszaf mentioned this pull request Apr 27, 2023
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jcasadogp pushed a commit that referenced this pull request Jul 10, 2024
@sofiamonsalve
Merge pull request #3 from hariszaf/develop
39e26a2 
order pages with st_pages
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@hariszaf hariszaf hariszaf approved these changes

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@jcasadogp @hariszaf