Add some a check for a valid first line in temporal data files. (#258) #4
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| name: test Ubuntu | |
| on: [push, pull_request] | |
| jobs: | |
| test: | |
| strategy: | |
| matrix: | |
| name: [Ubuntu-20.04, Ubuntu-22.04] | |
| include: | |
| - name: Ubuntu-20.04 | |
| version: ubuntu-20.04 | |
| image: ubuntu20 | |
| - name: Ubuntu-22.04 | |
| version: ubuntu-22.04 | |
| image: ubuntu22 | |
| runs-on: ${{ matrix.version }} | |
| container: dcodoni/lib:${{ matrix.image }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Build svZeroDSolver | |
| shell: bash | |
| run: | | |
| conda init | |
| source /conda/etc/profile.d/conda.sh | |
| conda activate svfsiplus | |
| git clone https://github.com/SimVascular/svZeroDSolver.git | |
| cd svZeroDSolver | |
| mkdir build | |
| cd build | |
| cmake .. | |
| make -j2 | |
| - name: Build svFSIplus | |
| run: | | |
| if [ -d "build" ]; then | |
| rm -rf "build" | |
| fi | |
| mkdir build | |
| cd build | |
| cmake -DENABLE_COVERAGE=ON -DENABLE_ARRAY_INDEX_CHECKING=ON -DENABLE_UNIT_TEST=ON -DSV_USE_TRILINOS:BOOL=ON .. | |
| make -j2 | |
| cd .. | |
| - name: Build svFSIplus (PETSc) | |
| run: | | |
| if [ -d "build-petsc" ]; then | |
| rm -rf "build-petsc" | |
| fi | |
| mkdir build-petsc | |
| cd build-petsc | |
| cmake -DENABLE_COVERAGE=ON -DENABLE_ARRAY_INDEX_CHECKING=ON -DENABLE_UNIT_TEST=ON -DSV_PETSC_DIR:STRING=/petsc .. | |
| make -j2 | |
| cd .. | |
| - name: Run integration tests | |
| run: | | |
| git config --global --add safe.directory /__w/svFSIplus/svFSIplus | |
| git lfs pull | |
| cd tests | |
| conda run -n svfsiplus pytest -rPv --durations=0 | |
| - name: Run unit tests | |
| run: | | |
| cd build/svFSI-build/Source/svFSI | |
| ctest --verbose | |
| - name: Generate code coverage | |
| run: | | |
| cd build/svFSI-build | |
| make coverage | |
| - name: Save coverage report | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage_report | |
| path: build/svFSI-build/coverage | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |