Releases: mrmckain/Fast-Plast
Fast-Plast v.1.2.8
Fast-Plast v.1.2.6
Multiple fixes and additions since v.1.2.2.
--skip parameter added. Allows users to skip the trimming step when "trim" option is include. Syntax: --skip trim
--only_coverage option added. Allows users to provide a chloroplast genome and reads to run the coverage analysis portion of Fast-Plast.
--Coverage used by Fast-Plast is printed to log and summary files.
--N's allowed in coverage and IR/SC identification from scaffolding.
--Faster runs of afin after initial coverage analysis.
--Minimum coverage for coverage analysis no longer defaulted as 0. Now estimated as 0.25 of average coverage across plastome.
--General bug fixes accuracy.
--Subsampling option added to allow for faster completion.
Fast-Plast v.1.2.2
--Updated Angiosperm gene list.
--Adapters for TruSeq and Nextera added.
--Post scaffolding cleaning to remove contamination.
Fast-Plast v.1.2.1
First full release with all added features. See Changelog on README for details.