Lighter 1.1.1 has LIGHTER_VERSION = 1.1.0 #22
Comments
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Thanks! I've fixed it and re-release v1.1.1. |
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Thank you |
5 tasks
dpryan79
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Jul 31, 2019
- bwa - flash - libdeflate - lighter - perl-findbin - pilon - samtools - seqtk - skesa - trimmomatic - velvet - shovill - bwa/0.7.8 * Add license_file parameter - bwa - flash - lighter - seqtk - velvet - trimmomatic/0.32 - pilon * Fix perl-findbin recipe - Made sure a test is present and that noarch: generic is specified * Fix shovill megahit dependency issue - Currently, shovill will only work with versions of megahit larger than or equal to 1.2.7. - This addresses issues tseemann/shovill#112 and voutcn/megahit#226 and #16545 - Added noarch: generic to build directive * Fix velvet build recipe to use conda CC and CFLAGS env var - Also changed the recipe to use Conda zlib * Add patches to work with compiler envvars for seqtk, lighter, bwa/0.7.4 and bwa/0.7.8 - Patches the Makefile to make use of the LDFLAGS environmental variable when it is available. This allows for the correct compilation under Bioconda. - seqtk patch has been submitted as a PR upstream: lh3/seqtk#142 - bwa patch has been submitted upstream: lh3/bwa#247 - lighter patch has been submitted upstream: mourisl/Lighter#22
kpalin
pushed a commit
to kpalin/bioconda-recipes
that referenced
this issue
Aug 7, 2019
- bwa - flash - libdeflate - lighter - perl-findbin - pilon - samtools - seqtk - skesa - trimmomatic - velvet - shovill - bwa/0.7.8 * Add license_file parameter - bwa - flash - lighter - seqtk - velvet - trimmomatic/0.32 - pilon * Fix perl-findbin recipe - Made sure a test is present and that noarch: generic is specified * Fix shovill megahit dependency issue - Currently, shovill will only work with versions of megahit larger than or equal to 1.2.7. - This addresses issues tseemann/shovill#112 and voutcn/megahit#226 and bioconda#16545 - Added noarch: generic to build directive * Fix velvet build recipe to use conda CC and CFLAGS env var - Also changed the recipe to use Conda zlib * Add patches to work with compiler envvars for seqtk, lighter, bwa/0.7.4 and bwa/0.7.8 - Patches the Makefile to make use of the LDFLAGS environmental variable when it is available. This allows for the correct compilation under Bioconda. - seqtk patch has been submitted as a PR upstream: lh3/seqtk#142 - bwa patch has been submitted upstream: lh3/bwa#247 - lighter patch has been submitted upstream: mourisl/Lighter#22
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