Particle-in-Cell for Efficient Swell - PiCLES

PiCLES is a fast and efficient wave model for Earth System Models, using Particle-in-Cell methods for better performance.

PiCLES:

JAMES paper version:

Quick Start

A brief guide on how to use PiCLES.

How to Install

Step 1: Install Julia

1. Download Julia v1.10.2 or higher from the official Julia website.
2. Follow the installation instructions for your operating system.

Step 2: Download PiCLES Repository

(Once registered as a Package this will be simpler, sry for the delay)

1. Open a terminal or command prompt.
2. Clone the PiCLES repository using Git:

   git clone https://github.com/mochell/PiCLES.git
   

3. Navigate into the cloned repository directory:

   cd PiCLES
   

Step 3: Install Dependencies and Activate Environment

1. Start Julia by typing julia in your terminal within the PiCLES.jl directory.
2. Activate the project environment:

   using Pkg
   Pkg.activate(".")

3. Install the required dependencies:

   Pkg.instantiate()

You are now ready to use PiCLES for your simulations.

How to Run Tests

To run the T04_2D_reg_test.jl file from the command line, follow these steps:

1. Open a terminal or command prompt.
2. Navigate to the directory where the T04_2D_reg_test.jl file is located.
3. Start Julia by typing julia in your terminal.
4. In the Julia REPL, include the T04_2D_reg_test.jl file:

   include("T04_2D_reg_test.jl")

5. The test will run and display the results in the terminal.

Basic model structure

PiCLES follows the modular model structure from Oceananigans.jl, but it does not currently share objects. Functionality from Oceananigans does not work in PiCLES.

A minimal working example is the following examples/example_00_minimal.jl:

using Pkg
# This will be replaced by the module load in the future
Pkg.activate("PiCLES/")  # Activate the PiCLES package 

using PiCLES
using PiCLES.Operators.core_2D: ParticleDefaults
using PiCLES.Models.WaveGrowthModels2D: WaveGrowth2D
using PiCLES.Simulations
using PiCLES.ParticleMesh: TwoDGrid, TwoDGridNotes, TwoDGridMesh

using PiCLES.ParticleSystems: particle_waves_v5 as PW
using Oceananigans.Units

# just for simple plotting
import Plots as plt

# Parameters
U10, V10 = 10.0, 10.0 # m/s 
DT = 10minutes
r_g0 = 0.85 # ratio of c / c_g (phase velocity/ group velocity).

# Define wind functions
u(x, y, t) = U10
v(x, y, t) = V10
winds = (u=u, v=v)

# Define grid
grid = TwoDGrid(100e3, 51, 100e3, 51) # rectangular grid, 51 grid points, 100e3 meters 
gn = TwoDGridNotes(grid)

# Define ODE parameters
ODEpars, Const_ID, Const_Scg = PW.ODEParameters(r_g=r_g0)

# Define particle equations
particle_system = PW.particle_equations(u, v, γ=Const_ID.γ, q=Const_ID.q);

# Calculate minimal wind sea based on characteristic winds
WindSeamin = FetchRelations.MinimalWindsea(U10, V10, DT)

# Define default particle
default_particle = ParticleDefaults(WindSeamin["lne"], WindSeamin["cg_bar_x"], WindSeamin["cg_bar_y"], 0.0, 0.0)

# Define ODE settings
ODE_settings = PW.ODESettings(
  Parameters=ODEpars,
  # define mininum energy threshold
  log_energy_minimum=WindSeamin["lne"],
  saving_step=DT,
  timestep=DT,
  total_time=T = 6days,
  dt=1e-3, 
  dtmin=1e-4, 
  force_dtmin=true)

# Build wave model
wave_model = WaveGrowth2D(; grid=grid,
  winds=winds,
  ODEsys=particle_system,
  ODEsets=ODE_settings,
  periodic_boundary=false,
  minimal_particle=FetchRelations.MinimalParticle(U10, V10, DT),
  movie=true)

# Build simulation
wave_simulation = Simulation(wave_model, Δt=DT, stop_time=2hour)

# Run simulation
run!(wave_simulation, cash_store=true)

# Plot initial state
istate = wave_simulation.store.store[end];
p1 = plt.heatmap(gn.x / 1e3, gn.y / 1e3, istate[:, :, 1])

How to Cite