Merge branch 'bvvpg'

pom.xml

@@ -196,6 +196,16 @@
             <artifactId>3D_Viewer</artifactId>
             <version>4.0.5</version>
         </dependency>
+        <dependency>
+		<groupId>nl.uu.science.cellbiology</groupId>
+			<artifactId>bvv-playground</artifactId>
+			<version>0.3.3</version>
+		</dependency>
+		<dependency>
+  			<groupId>com.formdev</groupId>
+  			<artifactId>flatlaf-jide-oss</artifactId>
+  			<version>3.0</version>
+		</dependency>
         <dependency>
             <groupId>org.scijava</groupId>
             <artifactId>j3dcore</artifactId>

src/main/java/org/embl/mobie/command/context/ConfigureBVVRenderingCommand.java

@@ -0,0 +1,86 @@
+/*-
+ * #%L
+ * Fiji viewer for MoBIE projects
+ * %%
+ * Copyright (C) 2018 - 2024 EMBL
+ * %%
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions are met:
+ * 
+ * 1. Redistributions of source code must retain the above copyright notice,
+ *    this list of conditions and the following disclaimer.
+ * 2. Redistributions in binary form must reproduce the above copyright notice,
+ *    this list of conditions and the following disclaimer in the documentation
+ *    and/or other materials provided with the distribution.
+ * 
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+ * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
+ * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ * POSSIBILITY OF SUCH DAMAGE.
+ * #L%
+ */
+package org.embl.mobie.command.context;
+
+import org.embl.mobie.MoBIE;
+import org.embl.mobie.command.CommandConstants;
+
+import org.scijava.Initializable;
+import org.scijava.plugin.Parameter;
+import org.scijava.plugin.Plugin;
+import sc.fiji.bdvpg.scijava.command.BdvPlaygroundActionCommand;
+
+@Plugin(type = BdvPlaygroundActionCommand.class, menuPath = CommandConstants.CONTEXT_MENU_ITEMS_ROOT + "Configure BigVolumeViewer Rendering")
+public class ConfigureBVVRenderingCommand implements BdvPlaygroundActionCommand, Initializable
+{
+	static { net.imagej.patcher.LegacyInjector.preinit(); }
+
+	@Parameter( label = "Render width" )
+	public int renderWidth = 600;
+
+	@Parameter( label = "Render height" )
+	public int renderHeight = 600;
+
+	@Parameter( label = "Dither window size",
+			choices = { "none (always render full resolution)", "2x2", "3x3", "4x4", "5x5", "6x6", "7x7", "8x8" } )
+	public String dithering = "3x3";
+
+	@Parameter( label = "Number of dither samples",
+			description = "Pixels are interpolated from this many nearest neighbors when dithering. This is not very expensive, it's fine to turn it up to 8.",
+			min="1",
+			max="8",
+			style="slider")
+	public int numDitherSamples = 3;
+
+	@Parameter( label = "GPU cache tile size" )
+	public int cacheBlockSize = 32;
+
+	@Parameter( label = "GPU cache size (in MB)",
+				description = "The size of the GPU cache texture will match this as close as possible with the given tile size." )
+	public int maxCacheSizeInMB = 500;
+
+	@Parameter( label = "Camera distance",
+				description = "Distance from camera to z=0 plane. In units of pixel width." )
+	public double dCam = 3000;
+
+	@Parameter( label = "Clip distance far",
+	description = "Visible depth from z=0 further away from the camera. In units of pixel width.")
+	public double dClipFar = 1000;
+
+	@Parameter( label = "Clip distance near",
+			description = "Visible depth from z=0 closer to the camera. In units of pixel width. MUST BE SMALLER THAN CAMERA DISTANCE!")
+	public double dClipNear = 1000;
+
+
+	@Override
+	public void run()
+	{
+		MoBIE.getInstance().getViewManager().getBvvMobie().updateBVVRenderSettings();
+	}
+}

src/main/java/org/embl/mobie/lib/bdv/view/SliceViewer.java

@@ -159,6 +159,7 @@ private void installContextMenuAndKeyboardShortCuts( )
 		actions.add( SourceAndConverterService.getCommandName( ManualTransformationCommand.class ) );
 		actions.add( SourceAndConverterService.getCommandName( EnterTransformationCommand.class ) );
 		actions.add( SourceAndConverterService.getCommandName( FlipCommand.class ) );
+		actions.add( SourceAndConverterService.getCommandName( ConfigureBVVRenderingCommand.class ) );
 		actions.add( UNDO_SEGMENT_SELECTIONS );
 		actions.add( LOAD_ADDITIONAL_VIEWS );
 		actions.add( SAVE_CURRENT_SETTINGS_AS_VIEW );