Skip to content
View mmagnus's full-sized avatar
152 followers · 244 following

Achievements

Achievement: QuickdrawAchievement: YOLOAchievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Achievements

Achievement: QuickdrawAchievement: YOLOAchievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Organizations

@RNA-Puzzles

Block or report mmagnus

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
mmagnus/README.md

🎓 Ph.D., Computational RNA biologist at Harvard University, USA

I'm trying to understand the evolution and role of RNA and RNPs in biological systems using computational methods (machine learning, molecular dynamics, structure prediction) and experimental (yeast genetics) and codify this knowledge into predictive computational models that can be applied for future RNA therapeutics.

https://mmagnus.github.io

Key papers:

  • Rearrangements within the U6 snRNA core at the transition between the two catalytic steps of splicing with Konarska @IMOL, Poland, 2019
  • RNA 3D Structure Prediction Using Multiple Sequence Alignment Information with Das and Bujnicki @ Stanford University, USA & IIMCB, Poland, 2019
  • RNA-Puzzles toolkit: A computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools with the RNA-Puzzle Team @ IIMCB & IMOL, Poland, 2020 & the server https://rna-tools.online 2022
  • RNA 3D structure prediction using Deep learning, with Rivas, @Harvard, US, 2023-

RNA https://github.com/mmagnus?tab=repositories&q=rna&type=&language=&sort

Emacs https://github.com/mmagnus?tab=repositories&q=emacs&type=&language=&sort

See my projects @Github https://github.com/mmagnus?tab=repositories&q=&type=&language=&sort=stargazers

Pinned Loading

  1. rna-tools rna-tools Public

    🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

    Jupyter Notebook 152 43

  2. geekbook geekbook Public

    G33KB00K3 - fun to read & fun to write -- 🤓 eXtreme eXtendable note taking system for nerds/geeks (including scientists!) docs: http://geekbook.rtfd.io = beautiful html generator of your markdown-b…

    Python 42 8

  3. Pocket-Plus-Calibre-Plugin Pocket-Plus-Calibre-Plugin Public

    Forked from onlyhavecans/ReadItLater-Calibre-Plugin

    📚 Modified version of the Calibre plugin for Pocket. Now, you get your articles organized by your Pocket tags, and more!

    Python 274 25

  4. EmacsOrgModeClockingXBar EmacsOrgModeClockingXBar Public

    see what you are working on with XBar, Conky ;-) [if using emacs/orgmode/clocking] + alternatives

    Python 12 1

  5. awesome-rna-3D-tools awesome-rna-3D-tools Public

    awesome tools for RNA

    15

  6. orgmode-capture-all orgmode-capture-all Public

    Capture ALL (with a right click) to OrgMode Inbox

    Python 5