Merge pull request #1 from BeatsonLab-MicrobialGenomics/master

This is now pip installable, general tidy up/organisation etc.

.bumpversion.cfg

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+[bumpversion]
+current_version = 1.0.2
+commit = True
+tag = False
+
+[bumpversion:file:setup.py]
+
+[bumpversion:file:discoplot/DiscoPlot.py]
+
+[bumpversion:file:do_release.sh]
+
+[bumpversion:file:docs/conf.py]
+

.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.cache
+nosetests.xml
+coverage.xml
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Us specific
+.ropeproject/
+docs/manual/

.travis.yml

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+language: python
+python:
+    - 2.7
+before_install:
+    # We do this to make sure we get dependencies
+    - sudo apt-get update -qq
+install:
+    - pip install -r requirements.txt --use-mirrors
+    - pip install .
+notifications:
+  email: true
+script:
+    # cd tests && sh TEST.sh
+    - echo 'Not testing ATM'

CITATION.txt

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+Mitchell J Sullivan & Scott A Beatson*
+DiscoPlot: Visualising discordant reads.
+https://github.com/BeatsonLab-MicrobialGenomics/DiscoPlot

MANIFEST.in

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+include LICENSE
+include requirements.txt
+include README.rst
+recursive-include docs/_build/html *