update documentation for 1.2.6

minoda-lab · May 25, 2023 · 99a2065 · 99a2065
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commit 99a2065
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diff --git a/CHANGELOG b/CHANGELOG
@@ -1,4 +1,9 @@
-### 1.2.5.2-dev
+# 1.2.6
+
+- updates BD Rhapsody to support v2 enhanced beads released in 2022
+- resolves minor bugs in BD Rhapsody v1 
+
+### 1.2.5.2
 
 - updates to SLiPT-Seq subroutine to correct removing quality scores from adapter sequence
 - updates SLiPT-Seq barcode whitelist to allow reverse-complement in R2 and trims UMI from 8 to 10 bp

diff --git a/docker_build.sh b/docker_build.sh
@@ -1,5 +1,5 @@
-version=1.2.5.1
-old_version=1.2.5
+version=1.2.5.2-dev
+old_version=1.2.5.1
 sed -i "s/$old_version/$version/g"  *md *html .version man/*sh inst/* *.cff
 sed -i 's/universcversion="$old_version"/universcversion="$version"/g' launch_universc.sh
 R -e "knitr::knit('README.Rmd')"; pandoc -f markdown -t html README.md > README.html
@@ -12,11 +12,12 @@ git push --no-verify origin master
 git push tag $version
 echo "building Docker container version $version"
 docker build -t universc:$version .
-docker tag  universc:$version universc:latest
-docker tag universc:$version docker.io/tomkellygenetics/universc:latest
+#docker tag  universc:$version universc:latest
+#docker tag universc:$version docker.io/tomkellygenetics/universc:latest
 docker tag universc:$version docker.io/tomkellygenetics/universc:$version
-docker push tomkellygenetics/universc:latest
+#docker push tomkellygenetics/universc:latest
 docker push tomkellygenetics/universc:$version
+exit 0
 tag universc:$version docker.pkg.github.com/minoda-lab/universc/universc:$version
 tag universc:$version docker.pkg.github.com/minoda-lab/universc/universc:latest
 docker push docker.pkg.github.com/minoda-lab/universc/universc:$version

diff --git a/launch_universc.sh b/launch_universc.sh
@@ -262,7 +262,7 @@ Mandatory arguments to long options are mandatory for short options too.
                                   SPLiT-Seq (8 bp UMI, 24 bp barcode): splitseq
                                   SPLiT-Seq v2.1 (10 bp UMI, 24 bp barcode): splitseq2
                                   STRT-Seq (6 bp barcode, no UMI): strt-seq
-                                  STRT-Seq-C1 (8 bp barode, 5 bp UMI): strt-seq-c1
+                                  STRT-Seq-C1 (8 bp barcode, 5 bp UMI): strt-seq-c1
                                   STRT-Seq-2i (13 bp barcode, 6 bp UMI): strt-seq-2i
                                   SureCell (18 bp barcode, 8 bp UMI): surecell, ddseq, biorad
                                 Custom inputs are also supported by giving the name "custom" and length of barcode and UMI separated by "_"