correct detecting cellranger versions and barcode directory #304
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| name: CI to docker hub | ||
| on: workflow_dispach | ||
| jobs: | ||
| test: | ||
| runs-on: ubuntu-20.04 | ||
| steps: | ||
| - | ||
| name: Login to DockerHub | ||
| uses: docker/login-action@v1 | ||
| with: | ||
| username: ${{ secrets.DOCKER_HUB_USERNAME }} | ||
| password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | ||
| build: | ||
| runs-on: ubuntu-20.04 | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - name: pull updates | ||
| run: git pull --ff-only origin $(git branch --show-current) | ||
| - uses: docker/setup-buildx-action@v1 | ||
| - uses: docker/login-action@v1 | ||
| with: | ||
| username: ${{ secrets.DOCKER_HUB_USERNAME }} | ||
| password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | ||
| registry: ${{ env.REGISTRY }} | ||
| - name: Build and push | ||
| uses: docker/build-push-action@v2 | ||
| with: | ||
| context: ./ | ||
| file: ./Dockerfile | ||
| tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test | ||
| push: false | ||
| push: | ||
| runs-on: ubuntu-20.04 | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - name: pull updates | ||
| run: git pull --ff-only origin $(git branch --show-current) | ||
| - uses: docker/setup-buildx-action@v1 | ||
| - uses: docker/login-action@v1 | ||
| with: | ||
| username: ${{ secrets.DOCKER_HUB_USERNAME }} | ||
| password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | ||
| registry: ${{ env.REGISTRY }} | ||
| - name: Build and push | ||
| uses: docker/build-push-action@v2 | ||
| with: | ||
| context: ./ | ||
| file: ./Dockerfile | ||
| tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test | ||
| push: true | ||
| diagnostics: | ||
| runs-on: ubuntu-20.04 | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - name: pull updates | ||
| run: git pull --ff-only origin $(git branch --show-current) | ||
| - uses: docker/setup-buildx-action@v1 | ||
| - uses: docker/login-action@v1 | ||
| with: | ||
| username: ${{ secrets.DOCKER_HUB_USERNAME }} | ||
| password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | ||
| registry: ${{ env.REGISTRY }} | ||
| - name: Build and push | ||
| uses: docker/build-push-action@v2 | ||
| with: | ||
| context: ./ | ||
| file: ./Dockerfile | ||
| tags: ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test | ||
| push: false | ||
| - name: Hello world | ||
| run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test echo "hello world" | ||
| - name: Repo diagnostics | ||
| run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test pwd;ls -d */ | ||
| - name: Repo size | ||
| run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test pwd; du -ckh -d 1 * | ||
| - name: Parent directory diagnostics | ||
| run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test pwd;ls -d ../*/ | ||
| - name: Parent directory size | ||
| run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test pwd; du -ckh -d 1 ../* | ||
| - name: Grandparent directory diagnostics | ||
| run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test pwd;ls -d ../../*/ | ||
| - name: Grandarent directory size | ||
| run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test pwd; du -ckh -d 2 ../../* | ||
| - name: Root directory diagnostics | ||
| run: docker run ${{ secrets.DOCKER_HUB_USERNAME }}/universc:test pwd;ls -d /*/ | ||
| - name: Root directory size | ||
| run: df -h | ||
